セミナー情報

セミナー情報

ATTED-II version 6: a coexpression database to analyze multiple condition-specific gene coexpressions for a broad range of plants.

演題 ATTED-II version 6: a coexpression database to analyze multiple condition-specific gene coexpressions for a broad range of plants.
講演者 大林 武 博士 (東北大学 大学院情報科学研究科)
使用言語 English
日時 平成23年1月11日(火曜日) 17:00~
場所 バイオサイエンス研究科 大セミナー室
内容

ATTED-II (http://atted.jp) is a gene coexpression database for a wide variety of experimental designs, such as prioritizations of genes for functional identification and analyses of the regulatory relationships among genes.

We have recently updated ATTED-II focusing on two new features: (1) To deeply analyze gene coexpression data, we prepared condition-specific coexpressions from five types of experimental sets (tissue, abiotic stress, biotic stress, hormones and light conditions). User can evaluate the coexpression by employing comparative gene lists and switchable gene networks. (2) In addition to Arabidopsis coexpression, rice coexpression is now available.

The representation of comparison tables between these two model species will make it possible to analyze the conservation of coexpression among flowering plants. With the ability to investigate condition-specific coexpression and species conservation, ATTED-II can help researchers to clarify the functional and regulatory networks of genes in a broad array of plant species.

問合せ先 GCOE 植物生殖遺伝学
木下 哲 (t-kinosita@bs.naist.jp)

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