Research outcomes

Research outcomes

Revealing the complex network of proteins inside the microtubule from cilia.

Motion is the most essential feature of the living organisms. Cilia and flagella are thin structures protruding from the eukaryotic cell surfaces and drive their motions. They are not only important in single celled eukaryotes like ciliate Tetrahymena but also important for human body functions. The core structure of cilia and flagella are the bundled nine doublet microtubules (doublets). High resolution structure of the doublets has not been obtained so far.

Dr. Ichikawa, an assistant professor at NAIST, worked with members of Bui lab from McGill University and obtained the first near-atomic resolution structure of the doublet by cryo-electron microscopy, which is the highest resolution structure of doublets obtained so far.

In the normal microtubule from cytoplasm, which is composed of tubulins as doublet, there is no proteins bound inside. In contrast, they found that there are numerous proteins bound inside the doublet tubulin lattice. These microtubule inner proteins (MIPs) were forming a complex network inside the doublet tubulin lattice. Since cilia and flagella have to withstand highly stressful environment with several tens of beating cycles per second, the network of the proteins is thought to stabilize the doublet microtubule structure from the inside.

Because of the high resolution achieved, they were able to identify one of the components of this protein network as Rib43a protein by tracing the structure. Rib43a was previously shown to be bound to the doublet but its exact localization hasn’t been shown. In their structure, Rib43a was going into the taxol-binding pocket of the tubulin. Taxol is a small molecule which stabilize the microtubule structure. Thus, Rib43a is thought to stabilize the tubulin lattice of the doublet similarly as taxol.

They were also successfully able to remove some MIPs by treating the doublet with detergent. Upon losing some MIPs inside, tubulin lattice underwent a conformational change into compacted structure. The elongated and compacted tubulin lattices were previously proposed to correspond to the stable and unstable microtubule structure, respectively. Therefore, MIPs are thought to “lock” the tubulin lattice structure of doublet into stable elongated conformation.

From these results, the molecular mechanism of how MIPs stabilize the doublet tubulin lattice was revealed for the first time.

Comments by Dr. Ichikawa

Dr.IchikawaCilia are microscopic molecular machinery which drives the motion of the cells. We obtained the 3D structure of doublet microtubule from cilia with the highest resolution so far. By doing so, we have demonstrated that there is an intricate network of proteins inside the tubulin lattice of the doublet. It is surprising that such a complicated protein network exists in a tiny confined space of microtubule and it shows the depth of life phenomenon. From now, we want to further understand functions of these proteins one by one. This work was achieved by the collaboration with the member of McGill University and Shintaroh Kubo from Kyoto University and I’d like to thank them here.

【Resource】

Title : Tubulin lattice in cilia is in a stressed form regulated by microtubule inner proteins

Authors : Muneyoshi Ichikawa, Ahmad Abdelzaher Zaki Khalifaa, Shintaroh Kubo, Daniel Dai, Kaustuv Basu, Mohammad Amin Faghfor Maghrebi, Javier Vargas & Khanh Huy Bui

Journal : Proceedings of the National Academy of Sciences of the United States of America

DOI : 10.1073/pnas.1911119116

[ Press Release] September 17, 2019

( September 18, 2019 )

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