(tekuratabs.naist.jp)

(tsakamotobs.naist.jp)

1. 高速シーケンサーを用いた単一細胞または特定の植物組織
    からのゲノム、エピゲノム、トランスクリプトーム解析技術の確立

2. 細胞間シグナリングによる成長制御の統合多重オミクス解析

• Tamaki, S., Tsuji, H., Matsumoto, A., Fujita, A., Shimatani, Z., Terada, R., Sakamoto, T., Kurata, T., and Shimamoto, K. (2015) FT-like proteins induce transposon silencing in the shoot apex during floral induction in rice. PNAS, doi: 10.1073/pnas.1417623112
  
• Kawafune, K., Hongoh, Y., Hamaji, T., Sakamoto, T., Kurata, T., Hirooka, S., Miyagishima, S., and Nozaki, H. (2015) Two different rickettsial bacteria invading Volvox carteri. PLOS ONE, in press
• Kinoshita,A., Hove,C.A., Tabata,R., Yamada,M., Shimizu,N., Ishida,T., Yamaguchi,K., Shigenobu,S., Takebayashi,Y., Iuchi,S., Kobayashi,M., Kurata, T., Wada,T., Seo,M., Hasebe,M., Blilou,I., Fukuda,H., Scheres,B., Heidstra,R., Kamiya,Y., Sawa,S. (2015) A plant U-box protein, PUB4, regulates asymmetric cell division and cell proliferation in the root meristem. Development, 142, 444-453. doi: 10.1242/dev.113167
• Sakakibara, K., Reisewitz, P., Aoyama, T., Friedrich, T., Ando, S., Sato, Y., Tamada, Y., Nishiyama, T., Hiwatashi, Y., Kurata, T., Ishikawa, M., Deguchi, H., Rensing, S.A., Werr, W., Murata, T., Hasebe, M., and Laux, T. (2014) WOX13-like genes are required for reprogramming of leaf and protoplast cells into stem cells in the moss Physcomitrella patens Development. 141, 1660-1670. doi: 10.1242/dev.097444
  
• Xu, B., Ohtani, M., Yamaguchi, M., Toyooka, K., Wakazaki, M., Sato, M., Kubo, M., Nakano, Y., Sano, R., Hiwatashi, Y., Murata, T., Kurata, T., Yoneda, A., Kato, K., Hasebe, M., Demura, T.(2014)
  Contribution of NAC Transcription Factors to Plant Adaptation to Land. Science. 343 (6178):1505-1508 doi: 10.1126/science.1248417
  
• Uchida, N., Sakamoto, T., Tasaka, M., Kurata, T. (2014) Identification of EMS-Induced Causal Mutations in Arabidopsis thaliana by Next-Generation Sequencing. Methods Mol Biol., 2014;1062:259-70. doi: 10.1007/978-1-62703-580-4_14.
  
• Kubo, M., Imai, A., Nishiyama, T., Ishikawa, M., Sato, Y., Kurata, T., Hiwatashi, Y., Reski, R., Hasebe, M. (2013) System for Stable β-Estradiol-Inducible Gene Expression in the Moss Physcomitrella patens. PLoS One,Sep 27;8(9):e77356. doi: 10.1371/journal.pone.0077356
  
• Chumsakul, O., Nakamura, K., Kurata, T., Sakamoto, T., Hobman, J.L., Ogasawara, N., Oshima, T., and Ishikawa, S.(2013) High-Resolution Mapping of In vivo Genomic Transcription Factor Binding Sites Using In situ DNase I Footprinting and ChIP-seq. DNA Res., April 11
  
• Buzas, D.M., Tamada, Y., Kurata, T. (2012) FLC: A Hidden Polycomb Response Element Shows Up in Silence. Plant Cell Physiol 53(5): 785-793 doi:10.1093/pcp/pcr163
  
• Nishiyama, T., Miyawaki, K., Ohshima, M., Thompson, K., Nagashima, A., Hasebe, M., Kurata, T. (2012) Digital Gene Expression Profiling by 5′-End Sequencing of cDNAs during Reprogramming in the Moss Physcomitrella patens. PLoS ONE 7(5): e36471
  
• Banks, J.A., Nishiyama, T., Hasebe, M., Bowman, J.L., Gribskov, M., dePamphilis, C., Albert, V.A., Aono, N., Aoyama, T., Ambrose, B.A., Ashton, N.W., Axtell, M.J., Barker, E., Barker, M.S., Bennetzen, J.L., Bonawitz, N.D., Chapple, C., Cheng, C., Correa, L.G., Dacre, M., DeBarry, J., Dreyer, I., Elias, M., Engstrom, E.M., Estelle, M., Feng, L., Finet, C., Floyd, S.K., Frommer, W.B., Fujita, T., Gramzow, L., Gutensohn, M., Harholt, J., Hattori, M., Heyl, A., Hirai, T., Hiwatashi, Y., Ishikawa, M., Iwata, M., Karol, KG., Koehler, B., Kolukisaoglu, U., Kubo, M., Kurata, T., Lalonde, S., Li, K., Li, Y., Litt, A., Lyons, E., Manning, G., Maruyama, T., Michael, TP., Mikami, K., Miyazaki, S., Morinaga, S., Murata, T., Mueller-Roeber, B., Nelson, DR., Obara, M., Oguri, Y., Olmstead, R.G., Onodera, N., Petersen, B.L., Pils, B., Prigge, M., Rensing, S.A., Riaño-Pachón, D.M., Roberts, A.W., Sato, Y., Scheller, H.V., Schulz, B., Schulz, C., Shakirov, E.V., Shibagaki, N., Shinohara, N., Shippen, D.E., Sørensen, I., Sotooka, R., Sugimoto, N., Sugita, M., Sumikawa, N., Tanurdzic, M., Theissen, G., Ulvskov, P., Wakazuki, S., Weng, J.K., Willats, W.W., Wipf, D., Wolf, P.G., Yang, L., Zimmer, A.D., Zhu, Q., Mitros, T., Hellsten, U., Loqué, D., Otillar, R., Salamov, A., Schmutz, J., Shapiro, H., Lindquist, E., Lucas, S., Rokhsar, D. and Grigoriev IV. (2011) The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science 332, 960-963
  
• Uchida, N., Sakamoto, T., Kurata, T. and Tasaka, M. (2011) Identification of EMS-Induced Causal Mutations in a Non-Reference Arabidopsis thaliana Accession by Whole Genome Sequencing. Plant Cell Physiol. 52, 716-722.
  
• 倉田哲也 (2009) ChIP-seqによるクロマチン・転写因子のゲノムワイド解析　特集「次世 代高速シークエンサーの応用と情報解析」　蛋白質　核酸　酵素　Vol 54、共立出版、1248-1255
• Hiwatashi, Y., Sato, Y., Kubo, M., Cheng, C., Kurata, T., Sakakibara, K., Nishiyama, T., and Hasebe, M. (2010) The Loss-of-Function Experiments in the moss Physcomitrella patens. Method in Molecular Biology, in press
• Kofuji, R., Yoshimura, T., Inoue, H., Sakakibara, K., Hiwatashi, Y., Kurata, T., Aoyama, T., Ueda, K., and Hasebe, M. (2009) Gametangia development in the moss Physcomitrella patens. Annual Plant Reviews 36, 167-181
• Saiga, S., Furumizu, C., Yokoyama, R., Kurata, T., Sato, S., Kato, T., Tabata, S., Suzuki, M., and Komeda, Y. (2008) The Arabidopsis OBERON1 and OBERON2 genes encode plant homeodomain finger proteins and are required for apical meristem maintenance.
  Development 135, 1751-1759 (2008)
  
• Ishida, T., Kurata, T., Okada, K., and Wada, T. (2008) A genetic regulatory network in the development of trichomes and root hairs. Annual Review Plant Biology 59, 365-386
  
• Kurata, T., Ishida, T., Kawabata-Awai, C., Noguchi, M., Hattori, S., Sano, R., Nagasaka, R., Tominaga, R., Koshino-Kimura, Y., Kato, T., Sato, S., Tabata, S., Okada, K., and Wada, T. (2005) Cell-to-cell movement of the CAPRICE protein in the Arabidopsis root epidermal cell differentiation. Development 132, 5387-5398
  
• Kurata, T., Okada, K., and Wada, T. (2005) Intercellular movement of transcription factors. Current Opinion in Plant Biology 8, 600-605
  
• Kurata, T., Kawabata-Awai, C., Sakuradani, E., Shimizu, S., Okada, K., and Wada, T. (2003) The YORE-YORE gene regulates multiple aspects of epidermal cell differentiation in Arabidopsis. Plant Journal 36, 55-66
  
• Wada, T., Kurata, T., Tominaga, R., Koshino-Kimura, Y., Tachibana, T., Goto, K., Marks, M.D., Shimura, Y., and Okada, K. (2002) Role of a positive regulator of root hair development, CAPRICE, in Arabidopsis root epidermal cell differentiation. Development 129, 5409-5419
  
• Fujihira, K., Kurata, T., Watahiki, M.K., Karahara, I., and Yamamoto, K.T. (2000) An agravitropic mutant of Arabidopsis, endodermal-amyloplast less 1, that lacks amyloplasts in hypocotyl endodermal cell layer. Plant Cell Physiology 41, 1193-1199
  
• Kurata, T. and Yamamoto, K.T. (1998) petit1, a conditional growth mutant of Arabidopsis defective in sucrose-dependent elongation growth. Plant Physiology 118, 793-801