Publications

2012 | 2013 | 2014 | 2015 | 2016 | 2017

2012 achievement

Project member :A01Fujimoto,M.
Author’s name :Nagano, M., Takahara, K., Fujimoto, M., Tsutsumi, N., Uchimiya, H., Kawai-Yamada, M.
Published year :2012
Title :Arabidopsis sphingolipid fatty acid 2-hydroxylases (AtFAH1 and AtFAH2) are functionally differentiated in fatty acid 2-hydroxylation and stress responses.
Journal/Book :Plant Physiol. 159:1138-1148.
Project member :A02Higaki, T., Hasezawa, S.
Author’s name :Higaki, T., Higaki, S., Hirota, M., Akita, K., Hasezawa, S.
Published year :2012
Title :Radionuclide analysis on bamboos following the Fukushima nuclear accident
Journal/Book :PLOS ONE 7: e34766.
Project member :A02Sato,S.
Author’s name :Furukawa, J. Kanazawa, M., Satoh, S.
Published year :2012
Title :Dormancy-induced temporal up-regulation of root activity in calcium translocation to shoot in Populus maximowiczii.
Journal/Book :Plant Root 6: 10-18
Project member :A01Fujimoto,M.
Author’s name :Hachiya, T., Watanabe, C.K., Fujimoto, M., Ishikawa, T., Takahara, K., Kawai-Yamada, M., Uchimiya, H., Uesono, Y., Terashima, .I, Noguchi, K.
Published year :2012
Title :Nitrate addition alleviates ammonium toxicity without lessening ammonium accumulation, organic acid depletion and inorganic cation depletion in Arabidopsis thaliana shoots.
Journal/Book :Plant Cell Physiol. 53:577-591
Project member :A01Demura, T.
Author’s name :Fujii., T., Sato, K., Matsui, N., Furuichi, T., Takenouchi, S., Nishikubo, N., Suzuki, Y., Kawai, S., Demura, T., Kajita, S., *Katayama, Y.
Published year :2012
Title :Enhancement of secondary xylem cell proliferation by Arabidopsis cyclin D overexpression in tobacco plants.
Journal/Book :Plant Cell Rep. 31: 1573-1580
Project member :A03Yamaguchi, S.
Author’s name :Nakaune, M., Hanada, A., Yin, Y.G., Matsukura, C., Yamaguchi, S., Ezura, H.
Published year :2012
Title :Molecular and physiological dissection of enhanced seed germination using short-term low-concentration salt seed priming in tomato.
Journal/Book :Plant Physiol Biochem. 52: 28-37
Project member :A03Yamaguchi, S.
Author’s name :Hirose, F., Inagaki, N., Hanada, A., Yamaguchi, S., Kamiya, Y., Miyao, A., Hirochika, H., Takano, M.
Published year :2012
Title :Cryptochrome and phytochrome cooperatively but independently reduce active gibberellin content in rice seedlings under light irradiation.
Journal/Book :Plant Cell Physiol. 53: 1570-1582.
Project member :A03Yamaguchi, S.
Author’s name :Martínez-Andújar, C., Pluskota, WE., Bassel, GW., Asahina, M., Pupel, P., Nguyen, TT., Takeda-Kamiya, N., Toubiana, D., Bai, B., Górecki, RJ., Fait, A., Yamaguchi, S., Nonogaki, H.
Published year :2012
Title :Mechanisms of hormonal regulation of endosperm cap-specific gene expression in tomato seeds.
Journal/Book :Plant J. 71: 575-586.
Project member :A03Yamaguchi, S.
Author’s name :Yoshida, S., Kameoka, H., Tempo, M., Akiyama, K., Umehara, M., Yamaguchi, S., Hayashi, H., Kyozuka, J., Shirasu, K.
Published year :2012
Title :The D3 F-box protein is a key component in host strigolactone responses essential for arbuscular mycorrhizal symbiosis.
Journal/Book :New Phytol. 196: 1208-1216
Project member :A03Yamaguchi, S.
Author’s name :Schneider, K., Breuer, C., Kawamura, A., Jikumaru, Y., Hanada, A., Fujioka, S., Ichikawa, T., Kondou, Y., Matsui, M., Kamiya, Y., Yamaguchi, S., Sugimoto, K.
Published year :2012
Title :Arabidopsis PIZZA has the capacity to acylate brassinosteroids.
Journal/Book :PLoS One 7: e46805
Project member :A03Yamaguchi, S. / Seto, Y.
Author’s name :Seto, Y., Kameoka, H., Yamaguchi, S., Kyozuka, J.
Published year :2012
Title :Recent advances in strigolactone research: chemical and biological aspects.
Journal/Book :Plant Cell Physiol. 53: 1843-1853
Project member :A03Aida, M.
Author’s name :Nahar, MAU., Ishida, T., Smyth, DR., Tasaka, M., Aida, M.
Published year :2012
Title :Interactions of CUP-SHAPED COTYLEDON and SPATULA genes control carpel margin development in Arabidopsis thaliana.
Journal/Book :Plant Cell Physiol. 53: 1134-1143
Project member :A03Sawa, S.
Author’s name :Ejima, C, Uwatoko, T, Ngan, B. T., Honda, H., Shimizu, N., Kiyohara, S., Hamasaki, R., and Sawa, S.
Published year :2012
Title :SNPs of CLAVATA receptors in tomato, in a context of rootknot nematode infection.
Journal/Book :Nematological Research. 2. 35-40.
Project member :A03Sawa, S.
Author’s name :Shimizu, N., Sawa, Y., and Sawa, S.
Published year :2012
Title :Adaptation and evolution of seed shape on bleeding area in Japanese orchids.
Journal/Book :International J. Biol. 4. 47-53.
Project member :A03Sawa, S.
Author’s name :Kiyohara, S., Fukunaga, H., and Sawa, S.
Published year :2012
Title :Characteristics of the falling speed of Japanese orchid seeds.
Journal/Book :International J. Biol. 4. 10-12.
Project member :A03Sawa, S.
Author’s name :Kiyohara, S., Sawa, S.
Published year :2012
Title :CLE Signaling Systems During Plant Development and Nematode Infection
Journal/Book :Plant Cell Physiol. 53. 1989-1999.
Project member :A02Igarashi, K
Author’s name :Yakovleva, M., Buzas, O., Matsumura, H., Samejima, M., Igarashi, K., Larsson, P.-O., Gorton, L., and Danielsson, B.
Published year :2012
Title : A novel combined thermometric and amperometric biosensor for lactose determination based on immobilised cellobiose dehydrogenase.
Journal/Book :Biosensors and Bioelectronics. 31. 251-256.
Project member :A02Igarashi, K.
Author’s name :Higashijima, K., Hori, C., Igarashi, K., Enomae, T., and Isogai, A.
Published year :2012
Title :First aid for flood-damaged paper using saltwater -The inhibiting effect of saltwater on mold growth-.
Journal/Book :Stud. Conserv. 57. 164-171.
Project member :A02Igarashi, K
Author’s name :Sugimoto, N., Igarashi, K., and Samejima, M.
Published year :2012
Title :Cellulose affinity purification of fusion proteins tagged with fungal family 1 cellulose-binding domain.
Journal/Book :Prot. Expres. Purif. 82. 290-296.
Project member :A02Igarashi, K.
Author’s name :Ferandez-Fueyo, E., Ruiz-Duenas, F.J., Ferreira, P., et al.
Published year :2012
Title :Comparative genomics of Ceriporiopsis subvermispora and Phanerochaete chrysosporium provide insight into selective ligninolysis.
Journal/Book :Proc. Nat. Acad. Sci. U.S.A. 109. 5458-5463.
Project member :A02Igarashi, K.
Author’s name :Hori, C., Suzuki, H., Igarashi, K., and Samejima, M.
Published year :2012
Title : Transcriptional response of cellobiose dehydrogenase gene to cello- and xylooligosaccharides in the basidiomycete Phanerochaete chrysosporium.
Journal/Book :Appl. Environ. Microbiol. 78. 3770-3773.
Project member :A02Igarashi, K.
Author’s name :Igarashi, K., Maruyama, M., Nakamura, A., Ishida, T., Wada, M., and Samejima, M.
Published year :2012
Title :Degradation of crystalline celluloses by Phanerochaete chrysosporium cellobiohydrolase II (Cel6A) heterologously expressed in methylotrophic yeast Pichia pastoris.
Journal/Book :J. Appl. Glycosci. 59. 105-110.
Project member :A02Igarashi, K.
Author’s name :Floudas, D., Binder, M., Riley, R., et al.,
Published year :2012
Title :The Paleozoic origin of enzymatic mechanisms for decay of lignin reconstructed using 31 fungal genomes.
Journal/Book :Science. 336. 1715-1719.
Project member :A02Igarashi, K.
Author’s name :Matsumura, H., Ortiz, R., Ludwig, R., Igarashi, K., Samejima, M., and Gorton, L.
Published year :2012
Title :Direct electrochemistry of Phanerochaete chrysosporium cellobiose dehydrogenase covalently attached onto gold nanoparticle modified solid gold electrodes.
Journal/Book :Langmuir. 28. 10925-10933.
Project member :A02Igarashi, K.
Author’s name :Suzuki, H., MacDonald, J., Syed, K., Salamov, A., Hori, C., Aerts, A., Henrissat, B., Wiebenga, A., vanKuyk, P. A., Barry, K., Lindquist, E., LaButti, K., Lapidus, A., Lucas, S., Coutinho, P., Gong, Y., Samejima, M., Mahadevan, R., Abou-Zaid, M., de Vries, R. P., Igarashi, K., Yadav, J. S., Grigoriev, I. V., and Master, E. R.
Published year :2012
Title :Comparative genomics of the white-rot fungi, Phanerochaete carnosa and P. chrysosporium, to elucidate the genetic basis of the distinct wood types they colonize.
Journal/Book :BMC Genomics. 13. 444.
Project member :A02Higaki, T. / Hasezawa, S.
Author’s name :Higaki, T., Higaki, S., Hirota, M., Akita, K., and Hasezawa, S.
Published year :2012
Title :Probabilistic mapping and image clustering for quantitative assessment of fluorescent protein localizations in Arabidopsis guard cells. Protocol Exchange.
Journal/Book :PLoS ONE 7(4). e34766. doi:10.1371/journal.pone.0034766
Project member :A01A02Ueda, T. / Higaki, T. / Kutsuna, N. / Hasezawa, S.
Author’s name :Higaki, T., Kutsuna, N., Hosokawa, Y., Akita, K., Ebine, K., Ueda, T., Kondo, N., and Hasezawa, S.
Published year :2012
Title :Statistical organelle dissection of Arabidopsis guard cells using image database LIPS.
Journal/Book :Sci. Rep. 2. 405. doi:10.1038/srep00405
Project member :A02Higaki, T. / Kutsuna, N. / Hasezawa, S.
Author’s name :Higaki, T., Kutsuna, N., Hasezawa, S.
Published year :2012
Title :Probabilistic mapping and image clustering for quantitative assessment of fluorescent protein localizations in Arabidopsis guard cells.
Journal/Book :Protocol Exchange. doi:10.1038/protex.2012.013
Project member :A02Hasezawa, S.
Author’s name :Sano, T., Yoshihara, T., Handa, K., Sato, MH., Nagata, T., Hasezawa, S.
Published year :2012
Title :Metal Ion Homeostasis Mediated by NRAMP Transporters in Plant Cells - Focused on Increased Resistance to Iron and Cadmium Ion.
Journal/Book :Crosstalk and Integration of Membrane Trafficking Pathway. 213-228.
Project member :A02Tsumuraya, Y. / Kotake, T.
Author’s name :Tryfona, T., Liang, H.-C., Kotake, T., Tsumuraya, Y., Stephens, E., and Dupree, P.
Published year :2012
Title :Structural characterisation of Arabidopsis leaf arabinogalactan polysaccharides.
Journal/Book :Plant Physiol. 160. 653-666.
Project member :A02Satoh, S. / Iwai, H. / Hasezawa, S.
Author’s name :Yazawa, K., Iwai, H., Sugiyama, H., Ito, S., Hasezawa, S., and Satoh, S.
Published year :2012
Title :Ectopic expression of the leucine-rich repeat-domain of cell wall extensin gene NpLRX1 disturbs morphogenesis of leaf cells by its association with cell membranes in tobacco.
Journal/Book :Plant Biotechnology. 29. 373-381.
Project member :A02Obayashi, T.
Author’s name :Sato, N., Suzuki, N., Sasaki, A., Aizawa, E., Obayashi, T., Kanazawa, M., Mizuno, T., Kano, M., Aoki, M., and Fukudo, S.
Published year :2012
Title :Corticotropin-releasing hormone receptor 1 gene variants in irritable bowel syndrome.
Journal/Book :PLoS One. 7. e45450.
Project member :A02Obayashi, T.
Author’s name :Kobayashi, K., Baba, S., Obayashi, T., Sata, M., Toyooka, K., Keraenen, M., Aro, EM., Fukaki, H., Ohta, H., Sugimoto, K., and Masuda,T.
Published year :2012
Title :Regulation of root greening by light and auxin/cytokinin signaling in Arabidopsis.
Journal/Book :Plant Cell. 24. 1081-1095.
Project member :A02Obayashi, T.
Author’s name :Kobayashi, K., Obayashi, T., and Masuda, T.
Published year :2012
Title :Role of the G-box element in regulation of chlorophyll biosynthesis in Arabidopsis roots.
Journal/Book :Plant Signaling and Behavior. 7. 922-926.
Project member :A01Hashimoto, T.
Author’s name :Hamada, T., Tominaga, M., Fukaya, T., Nakamura, M., Nakano, A., Watanabe, Y., Hashimoto, T., and Baskin, T.
Published year :2012
Title :RNA processing bodies, peroxisomes, Golgi bodies, mitochondria, and ER tubule junctions frequently pause at cortical microtubules.
Journal/Book :Plant Cell Physiol. 53. 699-708.
Project member :A01Hashimoto, T.
Author’s name :Nakamura, M., Yagi, N., Kato, T., Fujita, S., Kawashima, N. Ehrhardt, D.W., and Hashimoto, T.
Published year :2012
Title :Arabidopsis GCP3-INTERACTING PROTEIN 1/MOZART1 is an integral component of the g-tubulin-containing microtubule nucleating complex.
Journal/Book :Plant J. 71. 216-225.
Project member :A01Hashimoto, T.
Author’s name :Shoji, T., and Hashimoto, T.
Published year :2012
Title :DNA-binding and transcriptional activation properties of tobacco NIC2-locus ERF189 and related transcription factors.
Journal/Book :Plant Biotech. 29. 35-42.
Project member :A01Hashimoto, T.
Author’s name :Pakdeechanuan, P., Shoji, T., and Hashimoto, T.
Published year :2012
Title :Root-to-shoot translocation of alkaloids is dominantly suppressed in Nicotiana alata.
Journal/Book :Plant Cell Physiol. 53. 1247-1254.
Project member :A01Hashimoto, T.
Author’s name :Pakdeechanuan, P., Teoh, S., Shoji, T., and Hashimoto, T.
Published year :2012
Title :Non-functionalization of two CYP82E nicotine N-demethylase gene abolishes nornicotine formation in Nicotiana langsdorffii.
Journal/Book :Plant Cell Physiol. 53. 2038-2046.
Project member :A01Ueda, T.
Author’s name :Fujimoto, M., and Ueda, T.
Published year :2012
Title :Conserved and plant-unique mechanisms regulating plant post-Golgi traffic.
Journal/Book :Front. Plant Sci.
Project member :A01Ueda, T. / Uemura, T.
Author’s name :Ueda, T., Sato, M.H., and Uemura, T.
Published year :2012
Title :The role of Rab GTPases and SNARE proteins in plant endocytosis and post-Golgi trafficking.
Journal/Book :Endocytosis in Plants
Project member :A01Ueda, T. / Uemura, T.
Author’s name :Ito, E., Fujimoto, M., Ebine, K., Uemura, T., Ueda, T.
Published year :2012
Title :Dynamic behavior of clathrin in Arabidopsis thaliana unveiled by live imaging.
Journal/Book :Plant J.
Project member :A01Ueda, T. / Uemura, T.
Author’s name :Ebine, K., Miyakawa, N., Fujimoto, M., Uemura, T., Nakano, A., and Ueda, T.
Published year :2012
Title :An endosomal trafficking pathway regulated by the plant-unique RAB5, ARA6.
Journal/Book :Small GTPases.
Project member :A01Ueda, T. / Uemura, T.
Author’s name :Uemura, T., Kim, H., Saito, C., Ebine, K., Ueda, T., Schulze-Lefert, P., and Nakano, A.
Published year :2012
Title :Qa-SNAREs localised to the trans-Golgi network regulate multiple transport pathways and extracellular disease resistance in plants.
Journal/Book :Proc Natl Acad Sci USA.
Project member :A01Ueda, T. / Uemura, T.
Author’s name :Nielsen, ME., Feechan, A., Böhlenius, H., Ueda, T., and Christensen, HT.
Published year :2012
Title :The Arabidopsis ARF-GEF, GNOM, mediates transport required for innate immunity and focal accumulation of PEN1.
Journal/Book :Proc Natl Acad Sci USA.
Project member :A01Ueda, T. / Uemura, T.
Author’s name :Ito, Y., Uemura, T., Shoda, K., Fujimoto, M., Ueda, T., and Nakano, A.
Published year :2012
Title :cis-Golgi proteins accumulate near the ER exit sites and act as the scaffold for Golgi regeneration after brefeldin A treatment in tobacco BY-2 cells.
Journal/Book :Mol. Biol. Cell.
Project member :A01Ueda, T. / Uemura, T.
Author’s name :Uemura, T., Ueda, T., and Nakano, A.
Published year :2012
Title :The physiological role of SYP4 in the abiotic stress response.
Journal/Book :Plant Signaling & Behavior.
Project member :A01Ueda, T. / Uemura, T.
Author’s name :Ebine, K., Uemura, T., Nakano, A., and Ueda, T.
Published year :2012
Title :Flowering time modulation by a vacuolar SNARE via FLOWERING LOCUS C in Arabidopsis thaliana.
Journal/Book :PLoS ONE. 7:e42239
Project member :A01Demura, T.
Author’s name :Fujii, T., Sato, K., Matsui, N., Furuichi, T., Takenouchi, S., Nishikubo, N., Suzuki, Y., Kawai, S., Demura, T., Kajita, S., Katayama, Y.
Published year :2012
Title :Enhancement of secondary xylem cell proliferation by Arabidopsis cyclin D overexpression in tobacco plants.
Journal/Book :Plant Cell Rep.31:1573-1580
Project member :A01Demura, T. / Yamaguchi, M.
Author’s name :Ueda, K., Matsuura, H., Yamaguchi, M., Demura, T, Kato, K.
Published year :2012
Title :Genome-Wide Analyses of Changes in Translation State Caused by Elevated Temperature in Oryza sativa.
Journal/Book :Plant Cell Physiol.53:1481-1491
Project member :A01A02Demura, T. / Ohtani, M.
Author’s name :Narusaka, M., Ohtani, M., Demura, T., Shimada, R., Shirasu, K., Narusaka, Y.
Published year :2012
Title :Development of a model system comprising Populus as a model tree and Colletotrichum gloeosporioides as a model pathogen for studying host-pathogen interactions.
Journal/Book :Plant Biotechnology 29:511-514
Project member :A01A02Demura, T. / Ohtani, M.
Author’s name :Ohtani, M., Nakano, Y., Usami, T., Demura, T.
Published year :2012
Title :Comparative metabolome analysis of seed kernels in phorbol ester-containing and phorbol ester-free accessions of Jatropha curcas L.
Journal/Book :Plant Biotechnology 29: 171-174
Project member :A01A02Demura, T. / Ohtani, M.
Author’s name :Nakano, Y., /Ohtani, M., /Polsri, W., /Usami, T., /Sambongi, K., /Demura, T.
Published year :2012
Title :Characterization of the casbene synthase homolog from Jatropha (Jatropha curcas L.) .
Journal/Book :Plant Biotechnology
Project member :A02Igarashi, K
Author’s name :Ortiz, R., Matsumura, H., Tasca, F., Zahma, K., Samejima, M., Igarashi, K., Ludwig, R., Gorton, L.
Published year :2012
Title :Effect of Deglycosylation of Cellobiose Dehydrogenases on the Enhancement of Direct Electron Transfer with Electrodes.
Journal/Book :Anal. Chem.84:10315-10323 DOI: 10.1021/ac3022899
Project member :A02Iwai, H. / Satoh, S.
Author’s name :Iwai, H., Terao, A., Satoh, S.
Published year :2012
Title :Changes in distribution of cell wall polysaccharides in floral and fruit abscission zones during fruit development in tomato (Solanum lycopersicum).
Journal/Book :J. Plant Res, 126:427-437
Project member :A02Iwai, H. / Yokoyama, R. / Nishitani, K. / Satoh, S.
Author’s name :Yamamoto, T., Nakamura, A., Iwai, H., Ishii, T., Ma, J.F., Yokoyama, R., Nishitani, K., Satoh, S., Furukawa, J.
Published year :2012
Title :Effect of silicon deficiency on secondary cell wall synthesis in rice leaf.
Journal/Book :J. Plant Res. 125: 771-779
Project member :A01Ueda, T.
Author’s name :Asaoka, R., Uemura, T., Ito, J., Fujimoto, M., Ito, E., Ueda, T., Nakano, A.
Published year :2012
Title :Arabidopsis RABA1 GTPases are involved in the transport between the trans-Golgi network and the plasma membrane and are required for salinity stress tolerance.
Journal/Book :Plant J. 73: 240–249
Project member :A03Sawa, S.
Author’s name :Yamada, M., Sawa, S.
Published year :2012
Title :The roles of peptide hormones during plant root development
Journal/Book :Current Opinion in Plant Biology 16: 56-61
Project member :A02Yokoyama, R. / Nishitani, K.
Author’s name :Hongo, S., Sato, K., Yokoyama, R., Nishitani, K.
Published year :2012
Title :Demethylesterification of the Primary Wall by PECTIN METHYLESTERASE35 Provides Mechanical Support to the Arabidopsis Stem.
Journal/Book :Plant Cell 24: 2624-2634
Project member :A01A02Matsunaga, S. / Higaki, T. / Hasezawa, S. / Kutsuna, N.
Author’s name :Kutsuna, N., Higaki,T., Matsunaga, S., Otsuki, T., Yamaguchi, M., Fujii, H., Hasezawa, S.
Published year :2012
Title :Active learning framework with iterative clustering for bioimage classification.
Journal/Book :Nature Communications 3: 1032. doi:10.1038/ncomms2030
Project member :A02Igarashi, K.
Author’s name :Sugimoto, N., Igarashi, K., Wada, M., Samejima, M.
Published year :2012
Title :Adsorption characteristics of fungal family 1 cellulose-binding domain from Trichoderma reesei cellobiohydrolase I on crystalline cellulose: Negative cooperative adsorption via a steric exclusion effect.
Journal/Book :Langmuir 28: 14323-14329

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