植物分子遺伝学研究室

2015

• Tamaki, S., *Tsuji, H.(*Corresponding Author), Matsumoto, A., Fujita, A., Shimatani, Z., Terada, R., Sakamoto, T., Kurata, T., Shimamoto, K. (2015) FT-like proteins induce transposon silencing in the shoot apex during floral induction in rice. Proc. Natl. Acad. Sci. USA, 112; E901-911
  本学プレスリリース記事 : http://www.naist.jp/news/detail_j/topics/1952/
• *Tylewicz, S., *Tsuji, H., *Miskoloczi, P. (*Co-first Authors), Petterle, A., Azeez, A., Jonsson, K., Shimamoto, K., Bhalerao, R.P. (2015) Dual role of tree florigen activation complex component FD in photoperiodic growth control and adaptive response pathways. Proc. Natl. Acad. Sci. USA, in press.

2014

• 辻　寛之（2014）　フロリゲン活性化複合体の細胞内イメージング　植物の生長調節49　112-121
• Ishida, T., Tabata, R., Yamada, M., Aida, M., Mitsumasu, K., Fujiwara, M., Yamaguchi, K., Shigenobu, S., Higuchi, M.,Tsuji, H., Shimamoto, K., Hasebe, M., Fukuda, H., and Sawa, S. (2014) Heterotrimeric G proteins control stem cellproliferation through CLAVATA signaling in Arabidopsis. ENBO rep. In Press.
• Kawano, Y., Kawano-Kaneko, T., and Shimamoto, K. Rho family GTPase-dependent immunity in plants and animals. Front. Plant Sci. In press
• Kosami, K, Ohki, I., Nagano,M., Furuita, K., Sugiki, T., Kawano, Y., Kawasaki,Y., Fujiwara, T., Nakagawa, A., Shimamoto, K., and Kojima, C. The crystal structure of the plant small GTPase OsRac1 reveals its mode of binding to NADPH oxidase. J Biol Chem. In press
• Fujikawa Y, Nakanishi T., Kawakami H, Yamasaki K, Sato HM, Tsuji H, Matsuoka M, Kato N. (2014) Split luciferase complementation assay to detect regulated protein-protein interactions in rice protoplasts in a large-scale format. Rice, 7:11
• Tsuji H, Taoka K. (2014) Florigen Signaling. In The Enzymes, Elsevier, in press
• 辻　寛之 (2014)　高校生物解説書・植物編（監修 町田泰則）第３章「花芽形成とフロリゲン」 講談社
• 河野　洋治　(2014)　高校生物解説書・植物編（監修 町田泰則）第３章「そのほかの環境応答　病害抵抗性」　講談社
• 辻 寛之, 才原 徳子, 東 陽子, 三浦 史仁, 伊藤 隆司, 玉置 祥二郎, 倉田 哲也, 島本 功. 「全ゲノムバイサルファイトシーケンシングによる茎頂メリステムのメチローム解析」 第125回講演会 日本育種学会優秀発表賞受賞
  受賞記事 : http://bsw3.naist.jp/achievements/index.php?id=1079
• The NB-LRR proteins RGA4 and RGA5 interact functionally and physically to confer disease resistance. Cesari S, Kanzaki H, Fujiwara T, Bernoux M, Chalvon V, Kawano Y, Shimamoto K, Dodds P, Terauchi R, Kroj T. EMBO J. 2014 in press
• Palmitoylation-dependent Membrane Localization of the Rice Resistance Protein Pit Is Critical for the Activation of the Small GTPase OsRac 1. Kawano Y, Fujiwara T,Yao A, Housen Y, Hayashi K, Shimamoto K. J Biol Chem. 2014 289:19079-19088.

2013

• Gene editing a constitutively active OsRac 1 by homologous recombination-based gene targeting induces immune responses in rice. Dang TT, Shimatani Z, Kawano Y, Terada R, Shimamoto K. Plant Cell Physiol. 2013 54:2058-70
• Kawano, Y. and Shimamoto, K. (2013) Early signaling network in rice PRR-mediated and R-mediated immunity. Curr Opin Plant Biol.16(4): 496-504
• Akamatsu A, Wong H-L, Fujiwara M, Okuda J, Nishide K, Uno K, Imai K, Umemura K, Kawasaki T, Kawano Y, Shimamoto K (2013) An OsCEBiP/OsCERK1-OsRacGEF1-OsRac1 Module Is an Essential Early Component of Chitin-Induced Rice Immunity. Cell Host Microbe 13(4):465-76
• Yamaguchi K, Yamada K, Ishikawa K, Yoshimura S, Hayashi N, Uchihashi K, Ishihama N, Kishi-Kaboshi M, Takahashi A, Tsuge S, Ochiai H, Tada Y, Shimamoto K, Yoshioka H, Kawasaki T. (2013) A Receptor-like Cytoplasmic Kinase Targeted by a Plant Pathogen Effector Is Directly Phosphorylated by the Chitin Receptor and Mediates Rice Immunity. Cell Host Microbe 13: 347-357.
• Taoka K, Ohki I., Tsuji H., Kojima C. Shimamoto K. (2013) Structure and function of florigen and the receptor complex. Trends Plant Sci. in press. DOI 10.1016/j.tplants.2013.02.002
• 辻 寛之・田岡健一郎・島本 功 (2013) 花成ホルモン“フロリゲン”の構造と機能. 領域融合レビュー 2: e004
• Tsuji H, Nakamura H, Taoka K, Shimamoto K. (2013) Functional diversification of FD transcription factors in rice, components of florigen activation complexes. Plant Cell Physiol.54:385-397.
• Tsuji H, Taoka K, Shimamoto K. (2013) Florigen in rice: complex gene network for florigen transcription, florigen activation complex, and multiple functions. Curr. Opin. Plant Biol. in press, DOI: 10.1016/j.pbi.2013.01.005
• Tsuji H, Shimamoto K (2013) Flowering in rice. in Genetics and Genomics of Rice (eds. Qifa Zhang and Rod Wing), Springer, New York, NY.

2012

• 田岡健一郎, 大木 出, 辻 寛之, 児嶋長次郎, 島本 功 (2012) 花成ホルモンフロリゲンとその受容体の構造解析からみえてきたフロリゲン機能の分子基盤. 化学と生物 50: 654-659.
• 辻　寛之, 島本　功 (2012) フロリゲンが花を咲かせるメカニズム 農業技術大系 花卉編 32: 2-9.
• 辻　寛之, 田岡健一郎, 島本　功 (2012) 花咲かホルモン（フロリゲン）植調 46: 179-186.
• Wamaitha MJ, Yamamoto R, Wong HL, Kawasaki T, Kawano Y and Shimamoto K. (2012) OsRap2.6 transcription factor contributes to rice innate immunity through its interaction with Receptor for Activated Kinase-C 1 (RACK1). Rice 5:35
• Yamaguchi K, Imai K, Akamatsu A, Mihashi M, Hayashi N, Shimamoto K, Kawasaki T. (2012) SWAP70 functions as a Rac/Rop guanine nucleotide-exchange factor in rice. Plant J. 2012 70:389-397.
• Takahashi S, Kimura S, Kaya H, Iizuka A, Wong HL, Shimamoto K, Kuchitsu K (2012) Reactive oxygen species production and activation mechanism of the rice NADPH oxidase OsRbohB. J. Biochem. 52: 37-43.
• Kim SH, Oikawa T, Kyozuka J, Wong HL, Umemura K, Kishi-Kaboshi M, Takahashi A, Kawano Y, Kawasaki T, Shimamoto K. (2012) The bHLH Rac Immunity1 (RAI1) Is Activated by OsRac1 via OsMAPK3 and OsMAPK6 in Rice Immunity. Plant Cell Physiol. 2012 Apr;53(4):740-54.

2011

• Chen L, Shimamoto K (2011) Emerging roles of molecular chaperones in plant innate immunity. J. Gen. Plant Pathol. 77:409-417.
• Hd3a-14-3-3-OsFD1からなる複合体Florigen Activation Complexの機能解析
  辻寛之1・田岡健一郎1・大木出1・中島千佳1・児嶋長次郎1,2・島本功1 (1. 奈良先端大・バイオサイエンス, 2. 阪大蛋白研) 第120回講演会日本育種学会優秀発表賞
• Takahashi, Y. and Shimamoto, K. (2011) Heading date 1 (Hd1), an ortholog of Arabidopsis CONSTANS, is a possible target of human selection during domestication to diversify flowering times of cultivated rice.Genes Genet. Sys. 86: 175-182.
• avarro, C., Abelenda, J.A., Cruz-Oro, E., Cuellar, C.A., Tamaki, S., Silva, J., Shimamoto, K., Prat, S. (2011) Control of flowering and storage organ formation in potato by FLOWERING LOCUS T. Nature 478: 119-122.
• aoka, K.-I., Ohki, I., Tsuji, H., Furuita K., Hayashi, K., Yanase, T., Yamaguchi, M., Nakashima, C., Purwestri, Y. A., Tamaki, S., Ogaki, Y., Shimada, C., Nakagawa, A., Kojima C., Shimamoto, K. (2011) 14-3-3 proteins act as intracellular receptors for rice Hd3a florigen. Nature, 476: 332-335.
• Ishikawa, R., Aoki, M., Kurotani, K.-I., Yokoi, S., Shinomura, T., Takano, M. and Shimamoto, K. (2011) Phytochrome B regulates Heading date 1 (Hd1)-mediated expression of rice florigen Hd3a and critical day length in rice. Mol. Gen. Genet. 285: 461-470.
• Tsuji, H., Taoka K.-I. and Shimamoto, K. (2011) Regulation of flowering in rice: two florigen genes, a complex gene network, and natural variation. Curr. Opin. Plant Biol. 14: 45-52

2010

• Kawano Y, Chen, L, Shimamoto K. (2010) The function of Rac small GTPase and associated proteins in rice innate immunity. Rice, 3: 112 - 121
• Kawano Y, Akamatsu A, Hayashi K, Housen Y, Okuda J, Yao A, Nakashima A, Takahashi H, Yoshida H, Wong HL , Kawasaki T, and Shimamoto K (2010) Activation of a Rac GTPase by the NLR Family Disease Resistance Protein Pit Plays a Critical Role in Rice Innate Immunity. Cell Host Microbe, 20: 362-375.
• Chen L, Shiotani K, Togashi T, Miki D, Aoyama M, Wong HL, Kawasaki T, Shimamoto K. (2010) Analysis of the Rac/Rop small GTPase family in rice: expression, subcellular localization and role in disease resistance. Plant Cell Physiol. 51(4):585-95.
• Chen L, Hamada S, Fujiwara M, Zhu T, Thao NP, Wong HL, Krishna P, Ueda T, Kaku H, Shibuya N, Kawasaki T, Shimamoto K. (2010) The Hop/Sti1-Hsp90 chaperone complex facilitates the maturation and transport of a PAMP receptor in rice innate immunity. Cell Host Microbe. 7(3):185-96.
• Fujiwara T, Maisonneuve S, Isshiki M, Mizutani M, Chen L, Wong HL, Kawasaki T, Shimamoto K. (2010) Sekiguchi lesion gene encodes a cytochrome P450 monooxygenase that catalyzes conversion of tryptamine to serotonin in rice. J Biol Chem. 285(15):11308-13.
• Oda T, Hashimoto H, Kuwabara N, Akashi S, Hayashi K, Kojima C, Wong HL, Kawasaki T, Shimamoto K, Sato M, Shimizu T. (2010) Structure of the N-terminal regulatory domain of a plant NADPH oxidase and its functional implications. J Biol Chem.;285(2):1435-45.

著書

• 河野　洋治、島本　功: 低分子量Gタンパク質Rac/Ropファミリーによる植物免疫の制御機構　蛋白質　核酸　酵素　増刊　(2010) 印刷中

2009

• Wong HL, Shimamoto K. (2009) Sending ROS on a bullet train. Sci Signal. 29;2(90):pe60.
• Fujiwara M, Hamada S, Hiratsuka M, Fukao Y, Kawasaki T, and Shimamoto K (2009) Proteome analysis of detergent resistant membranes (DRMs) associated with OsRac1 mediated innate immunity in rice. Plant Cell Physiol., 50: 1191-1200.
• Komiya R, Yokoi S, Shimamoto K. (2009) A gene network for long-day flowering activates RFT1 encoding a mobile flowering signal in rice. Development.36(20):3443-50.
• Ishikawa, R., Shinomura, T., Takano, M. and Shimamoto, K. (2009) Phytochrme dependent quantitative control of Hd3a transcription is the basis of the night break effect in rice flowering. Genes Genet. Sys. 84: 179-184.
• Takahashi, Y., Teshima, K.M., Yokoi, S., Innan, H. and Shimamoto, K. (2009) Variations in Hd1 proteins, Hd3a promoters, and Ehd1 expression levels contribute to diversity of flowering time in cultivated rice. Proc. Natl. Acad. Sci. USA. 106: 4555-4560.
• Purwestri, Y.A., Ogaki, Y., Tamaki, S., Tsuji, H. and Shimamoto, K. (2009) The 14-3-3 protein GF14c acts as a negative regulator of flowering in rice by interacting with the florigen Hd3a. Plant Cell Physiol. 50: 429-438.

著書

• 田岡健一郎、辻寛之、島本功 (2009) 花成ホルモン,フロリゲン--その構造解析から分子機構の理解へ　蛋白質核酸酵素 54: 1702-1707
• 藤原正幸、島本　功 (2009) 植物の免疫機構を制御するタンパク質複合体“Defensome”, 化学と生物　47(6): 378-380
• Hann Ling Wong、石川洋輔、島本　功：植物におけるNADPH オキシダーゼの制御機構、実験医学増刊　27(15）: 80-83 (2009)

2008

• Nakashima A., Chen L., Thao NP., Fujiwara M, Wong HL., Kuwano M., Umemura K.,Shirasu K., Kawasaki T., and Shimamoto K.(2008) RACK1 functions in rice innate immunity by interacting with the Rac1 immune complex . Plant Cell.20, 2265-2279.
• Abe M., Fujiwara M.,Kurotani K., Yokoi S., and Shimamoto K. (2008). Identification of dynamin as an interactor of rice GIGANTEA by tandem affinity purification (TAP).Plant Cell physiol. 49, 420-432
• Komiya R., Ikegami A., Tamaki S., Yokoi S,. and Shimamoto K. (2008). Hd3a and RFT1 are essential for flowering in rice. Development 135,

2007

• Thao NP., Chen L., Nakashima A., Hara S., Umemura K., Takahashi A., Shirasu K., Kawasaki T., and Shimamoto K. (2007). RAR1 and HSP90 form a complex with Rac/ Rop GTPase and function in innate-immune responses in rice. Plant Cell. 19, 12, 4035-4045.
• Wong H.L., Pinontoan R., Hayashi K., Tabata R., Yaeno T., Hasegawa K., Kojima C., Yoshioka H., Iba K., Kawasaki T., and Shimamoto K. (2007). Regulation of Rice NADPH Oxidase by Binding of Rac GTPase to Its N-Terminal Extension. Plant Cell. 19, 12, 4022-4034.
• Okano Y., Miki D., and Shimamoto K. (2007). Small interfering RNA (SiRNA) taageting of endogenous promoters induces DNA methylation, but not necessarily gene silencing, in rice. Plant J. 65-77.
• Tamaki S., Matsuo S., Wong H.L., Yokoi S., and Shimamoto K. (2007) Hd3a Protein is a Mobile Flowering Signal in Rice. Science 316. 1033-1036
• Takahashi A., Agrawal G.K., Yamazaki M., Onosato K., Miyano A., Kawasaki T., Shimamoto K., and Hirochika H. (2007). Rice Pti1a negatively regulates RAR1-dependent defense responses. Plant Cell 19, 2940-2951.
• Kobayashi M., Ohura I., Kawakita K., Yokota N., Fujiwara M., Shimamoto K., Doke N., and Yoshioka H. (2007). Calcium-dependent protein kinases regulate the production of reactie oxygen species by potato NADPH oxidase. Plant Cell 19, 1065-1080.

2006

• Fujiwara M., Umemura K., Kawasaki T., and Shimato K. (2006). Proteomics of Rac GTPase signaling reveals its predominant role inelicitor-induced defense response of cultured rice cells. Plant Physiol.140, 734-745.
• Kawasaki, T., Koita, H., Nakatsubo, T., Hasegawa, K., Wakabayashi, K., Takahashi, H., Urnemura, K., Urnezawa, T. and Shimamoto, K. (2006) Cinnamoyl-CoA reductase, a key enzyme in lignin biosynthesis, is an effector of small GTPase Rac in defense signaling in rice. Proc. Natl. Acad. Sci. USA 103: 230-235.
• 石川亮、横井修司、島本功 (2006) 温故知新：光中断実験から光周性による開花の分子機構に迫る 蛋白質核酸酵素 51、共立出版 pp933-942
• 岩野恵、Wong Hann Ling、島本功 (2006) FRET 解析　福田裕穂ら監修、植物の細胞を観る実験プロトコール、植物細胞工学シリーズ22、秀潤社 pp132-139
• Isshiki, M., Tsumoto, A. and Shimamoto, K.(2006)The serine/arginine-rich protein family in rice plays important roles in constitutive and alternative splicing of pre-mRNA. Plant Cell18:146-158..

2005

• Ishikawa, R., Tamaki, S., Yokoi, S., Inagaki, N., Shinomura, T., Takano, M. and Shimamoto, K. (2005) Suppression of the floral activator Hd3a is the principal cause of the night break effect in rice. Plant Cell 17: 3326-3336
• Lieberherr, D., Thao, N. P., Nakashima, A., Umemura, K., Kawasaki,. T. and Shimamoto, K. (2005) A sphingolipid elicitor-inducible mitogen-activated protein kinase is regulated by the small GTPase OsRac1 and heterotrimeric G-protein in rice. Plant Pyysiol. 138: 1644-1652
• Moritoh, S., Miki, D., Akiyama, M., Kawahara, M., Izawa, T., Maki, H. and Shimamoto, K. (2005) RNAi-mediated silencing of OsGEN-L (OsGEN-like), a new member of the RAD2/XPG nuclease family, causes male sterility by defect of microspore development in rice. Plant Cell Pysiol. 46: 699-715
• Tsunezuka, H., Fujiwara, M., Kawasaki, T. and Shimamoto, K. (2005) Proteome analysis of programmed cell death and defense signaling using the rice lesion mimic mutant cdr2. Mol. Plant Microbe Interact. 18: 52-59
• Kawasaki T., Nam J., Boyes D. C., Holt B. F.,3rd, Hubert D.A., Wiig A., and Dangle J.L. (2005). A duplicated pair of Arabidopsis RING-finger E3 ligases contribute to the RPM1-and RPS2-mediated hypersensitive response. Plant J. 44, 258-270
• Shimamoto , K. Nakashima, M., Thao, N. P., Chen, L., Wong, H.L., Miki,D., Imai, K., Maisonneuve, S., Takahashi, H., Kawaguchi, Y., Hirai, S. and Kawasaki, T. (2005) Molecular signaling in disease resistance of rice. In Rice Genetics V
• 横井修司、島本功 (2005) 光周性による開花の制御、学術月報 58、 pp32-36
• 岡野陽介、三木大介、島本功 (2005) 2つめのRNAi:siRNAによるDNAとクロマチンの修飾、化学と生物 43、 pp399-405
• 川崎努、島本功 (2005) Gタンパク質を介した病原体認識と耐病性シグナリング、植物感染生理談話会論文集41、 pp23-30
• 玉置祥二郎、島本功 (2005)　イネの培養系とエレクトロポレーションによる一過的発現解析 島本功ら監修 モデル植物の実験プロトコール、植物細胞工学シリーズ 21、pp 134-138
• 一色正之 (2005)イネのDNA・RNA単離法、島本功ら監修　モデル植物の実験プロトコール、植物細胞工学シリーズ21、 pp 86-89
• 川崎努 (2005) プルダウンアッセイ法、島本功ら監修 モデル植物の実験プロトコール、植物細胞工学シリーズ21、pp 243-246
• Shimamoto, K. and Yokoi, S. (2005) The Photoperiodic Control of Flowering in Rice, a Short-day Plant. in Light Sensing in Plants, M. Wada, K. Shimazaki, M. lino(Eds.)
• Miki, D., Itoh, R. and Shimamoto, K. (2005) RNA silencing of single and multiple members in a gene family of rice. Plant Physiol.138:1903-1913

2004

• Wong, H. L., Sakamoto, T., Kawasaki, T., Umemura, K. and Shimamoto, K. (2004) Down-regulation of metallothionein, a reactive oxygen scavenger, by the small GTPase OsRac1 in rice. Plant Physiol. 135: 1447-1456.
• Miki, D. and Shimamoto, K. (2004) Simple RNAi vectors for stable and transient suppression of gene function in rice. Plant Cell Physiol. 45: 490-495
• Morino, K., Olesen, O. A. and Shimamoto, K. (2004) Silencing of the aleurone-specific Ltp2-fus gene in transgenic rice is reversed by transgene rearrangements and loss of aberrant transcripts. Plant Cell Physiol. 45: 1500-1508
• Opsahl-Sorteberg, H. G., Divon, H. H., Nielsen, P. S., Kalla, R., Hammond-Kosack, B., Shimamoto, K. and Kohli, A. (2004) Identification of a 49-bp fragment of the HvLTP2 promoter directing aleurone cell specific expression. Gene 341: 49-58.
• 川崎努、島本功 (2004) Gタンパク質を介した抵抗性のシグナル伝達 島本功ら監修　分子レベルからみた植物の耐病性　植物細胞工学シリーズ19　秀潤社　pp 111-117
• 川崎努、島本功 (2004) イネの防御反応、植物感染生理談話会論文集40、pp 69-76
• 横井修司、島本功 (2004) 日長による植物の開花制御　蛋白質核酸酵素　49　共立出版　pp. 28-35
• 三木大介、島本功 (2004) 植物におけるRNAiの分子機構とその応用 実験医学22、羊土社　pp 461-469

2003

• Hayama, R., Yokoi, S., Tamaki, S., Yano, M. and Shimamoto, K. (2003) Adaptation of photoperiodic control pathways produces short-day flowering in rice. Nature 422: 719-722.
• Takahashi, A., Kawasaki, T., Wong, H. L., Suharsono, U., Hirano, H. and Shimamoto, K. (2003) Hyperphosphorylation of a mitochondrial protein, prohibitin, is induced by calyculin A in a rice lesion-mimic mutant cdr1. Plant Physiol. 132: 1861-1869.
• Chujo, A., Zhang, Z., Kishino, H., Shimamoto, K. and Kyozuka, J. (2003) Partial conservation of LFY function between rice and Arabidopsis. Plant Cell Physiol. 44: 1311-1319.
• Komatsu, K., Maekawa, M., Ujiie, S., Satake, Y., Furutani, I., Okamoto, H., Shimamoto, K. and Kyozuka, J. (2003) LAX and SPA: Major regulators of shoot branching in rice. Proc. Natl. Acad. Sci. USA 100: 11765-11770.
• Komatsu, M., Chujo, A., Nagato, Y., Shimamoto, K. and Kyozuka, J. (2003) FRIZZY PANICLE is required to prevent the formation of axillary meristems and to establish floral meristem identity in rice spikelets. Development 130: 3841-3850.
• Komatsu, M., Shimamoto, K. and Kyozuka, J. (2003) Two-step regulation and continuous retrotransposition of the rice LINE-type retrotransposon Karma. Plant Cell 15: 1934-1944.

2002

• Suharsono, U., Fujisawa, Y., Kawasaki, T., Iwasaki, Y., Satoh, H. and Shimamoto, K. (2002) The heterotrimeric G protein alpha subunit acts upstream of the small GTPase Rac in disease resistance of rice. Proc. Natl. Acad. Sci. USA 99: 13307-13312.
• Izawa, T., Oikawa, T., Sugiyama, N., Tanisaka, T., Yano, M. and Shimamoto, K. (2002) Phytochrome mediates the external light signal to repress FT orthologs in photoperiodic flowering of rice. Genes Dev. 16: 2006-2020
• Shimamoto, K. and Kyozuka, J. (2002) Rice as a model for comparative genomics of plants. Annu. Rev. Plant Biol. 53: 399-419
• Shimamoto, K. (2002) Picking genes in the rice genome. Nature Biotech. 20: 983-984
• Hayama, R., Izawa, T. and Shimamoto, K. (2002) Isolation of rice genes possibly involved in the photoperiodic control of flowering by a fluorescent differential display method. Plant Cell Physiol. 43:494-504.
• Nakagawa, M., Shimamoto, K. and Kyozuka, J. (2002) Overexpression of RCN1 and RCN2, rice TERMINAL FLOWER 1/CENTRORADIALIS homologs, confers delay of phase teansition and altered panicle morphology in rice. Plant J. 29: 743-750
• Kyozuka, J., and Shimamoto, K. (2002) Ectopic expression of OsMADS3, a rice ortholog of AFAMOUS, caused a homeotic transformation of lodicules to stamens in transgenic rice plants. Plant Cell Physiol. 43: 130-135.
• Shimamoto, K., Suharsono, U., Ono, E., Wong, H.L. and Kawasaki, T. (2002) G protein signaling in disease resistance of rice. In Biology of Plant-Microbe Interaction. Vol3, Leong, S.A. et al. Eds, is-MPMI pp83-87
• Asano, T., Kunieda, N., Omura, Y., Ibe, H., Kawasaki, T., Takano, M., Sato, M., Furuhashi, H., Mujin, T., Takaiwa, F., Wu, C-Y., Tada, Y., Satozawa, T., Sakamoto, M. and Shimada, H. (2002) Rice SPK, a calmodulin-like domain protein kinase, is required for storage product accumulation during seed development: Phosphorylation of sucrose synthase is a possible factor. Plant Cell 14: 619-628
• 中島綾子、島本　功　(2002) 植物の低分子量Gタンパク質Rac/Ropファミリーの構造と機能、岡田清孝ら編　植物の形づくり　蛋白質核酸酵素　共立出版　pp. 1723-1727
• 藤原正幸、島本　功　(2002)　病害虫耐性植物の分子育種　新名ら監　植物代謝工学ハンドブック　NTS　pp. 475-491
• 早間良輔、島本 功　(2002) 短日植物の花成時期を制御する分子機構、岡田清孝ら編　植物の形づくり　蛋白質核酸酵素　共立出版　pp. 1541-1546
• 三木大介、島本功 (2002) イネのRNAiプロトコル　細胞工学　21　秀潤社 pp 1475-1480

2001

• Ono, E., Wong, H. L., Kawasaki, T., Hasegawa, M., Kodama, O. and Shimamoto, K. (2001) Essential role of the small GTPase Rac in disease resistance of rice. Proc. Natl. Acad. Sci. USA 98: 759-764.
• Isshiki, M., Yamamoto, K., Satoh, H., and Shimamoto, K. (2001) Nonsense-mediated decay of mutant waxy mRNA in rice. Plant Physiol. 125: 1388-1395.
• Komatsu, M., Maekawa, M., Shimamoto, K. and Kyozuka, J. (2001) The LAX1 and FRIZZY PANICLE2 genes determine the infloresence architecture of rice by controlling rachis-branch and spikelet development. Devel. Biol. 234: 364-373.
• Sugiyama, N., Izawa, T., Oikawa, T. and Shimamoto, K. (2001) Light regulation of circadian clock-controlled gene expression in rice. Plant J. 26: 607-615.
• Saijo, Y., Kinoshita, N., Ishiyama, K., Hata, S., Kyozuka, J., Hayakawa, T., Nakamura, T., Shimamoto, K., Yamaya, T. and Izui, K. (2001) A Ca2+-dependent protein kinase that endows rice plants with cold- and salt-stress tolerance functions in vascular bundles. Plant Cell Physiol. 42: 1228-1233.
• Mizuno, K., Kobayashi, E., Tachibana, M., Kawasaki, T., Fujimura, T., Funane, K., Kobayashi, M., and Baba, T. (2001) Characterization of an isoform of rice starch branching enzyme, RBE4, in developing seeds. Plant Cell Physiol. 42: 349-357.

2000

• Isshiki, M., Nakajima, M., Satoh, H. and Shimamoto, K. (2000) dull: rice mutants with tissue-specific effects on the splicing of the waxy pre-mRNA. Plant J. 23: 451-460.
• Izawa, T., Oikawa, T., Tokutomi, S., Okuno, K. and Shimamoto, K. (2000) Phytochromes confer the photoperiodic control of flowering in rice (a short-day plant). Plant J. 22: 391-399.
• Kyozuka, J., Kovayashi, T., Morita, M. and Shimamoto, K. (2000) Spatially and temporally regulated expression of rice MADS box genes with similarity to Arabidopsis class A, B and C genes. Plant Cell Physiol. 41:710-718
• Kanno, T., Naito, S. and Shimamoto, K. (2000) Post-transcriptional silencing in cultured rice cells. Plant Cell Physiol. 41: 321-326
• Saijo, Y., Hata, S., Kyozuka, J., Shimamoto, K. and Izui, K. (2000) Over-expression of a single Ca2+-dependent protein kinase confers both cold and salt/drought tolerance on rice plants. Plant J. 23: 319-327.
• Terada, R., Nakajima. M., Isshiki, M., Okagaki, R., Wessler, S. R. and Shimamoto, K. (2000) Antisense Waxy genes with highly active promoters effectively suppress waxy gene expression in transgenic rice. Plant Cell Physiol. 41:881-888
• 岩渕　雅樹、岡田　清孝、島本　功　編　(2000)　モデル植物ラボマニュアル分子遺伝学　分子生物学的実験法　シュプリンガーフェアラーク東京
• 川崎　努 (2000) 植物の細胞死、植物細胞の分裂　秀潤社 pp. 176-179.
• 川崎　努 (2000) 植物の病気と細胞死、植物の化学調節、植物化学調節学会編 pp. 67-76
• 三木大介、島本　功　(2000)　転写後型ジーンサイレンシングの分子機構と細胞間移行、岡田清孝ら編植物の形を決める分子機構　秀潤社　pp. 278-281

1999

• Kawasaki, T., Henmi, K., One, E., Hatakeyama, S., Iwano, M., Satoh, H. and Shimamoto, K. (1999) The small GTP-binding pretein Rac is a regulator of cell death in plants. Proc. Natl. Acad. Sci. USA 96: 10922-10926.
• Enoki, H., Izawa, T., Kawahara, M., Komatsu. M., Koh., Kyozuka, J. and Shimamoto, K. (1999) Ac ad a tool for the functional genomics of rice. Plant J. 19:605-613.
• Takahashi, A., Kawasaki, T., Henmi, K., Shii, K., Kodama, O., Satoh, H. and Shimamoto, K. (1999) Lesion mimic mutants of rice with alteration in early signaling events of defense. Plant J. 17(5):535-45.
• Morino, K., Olsen, O. A. and Shimamoto, K. (1999) Silencing of an aleurone-specific gene in transgenic rice is caused by a rearranged transgene. Plant J. 17: 275-285.
• Shimamoto, K., Takahashi, A., Henmi, K., One, E., Hatakeyama, S., Iwano, M. and Kawasaki, T. (1999) Programmed cell death in plants. Plant Biotech. 16: 49-53.
• Shimamoto, K. (ed.) (1999) Molecular Biology of Rice, Springer Verlag, Tokyo, Berlin, NewYork
• Kawasaki, T., Okumura, S., Kishimoto, N., Shimada, H., Ichikawa, N. (1999) RNA maturation of the rice SPK gene may incolve in trans-splicing. Plant J 18: 625-632
• 島本　功、川崎　努 (1999) 植物の病害と耐病性、　横田明穂編　植物分子生理学入門　学会出版センター pp. 139-158

1998

• Isshiki, M., Morino, K., Nakajima, M., Okagaki, R. J., Wessler, S. R., Izawa, T. and Shimamoto, K. (1998) A naturally occurring functional allele of the rice waxy locus has a GT to TT mutation at the 5 ' splice site of the first intron. Plant J. 15: 133-138.
• Kyozuka, J., Konishi, S., Nemoto, K., Izawa, T. and Shimamoto, K. (1998) Down-regulation of RFL, the FLO/LFY homolog of rice, accompanied with panicle branch initiation. Proc. Natl. Acad. Sci. USA 95: 1979-1982.
• 島本功 (1998) 病気から身を守る仕組み、植物の生長、クバプロ pp42-50