Publications

No.094
Lack of cytosolic glutamine synthetase1;2 in vascular tissues of axillary buds caused severe reduction in their outgrowth and disorder of metabolic balance in rice seedlings.
Ohashi, M., Ishiyama, K., Kusano, M., Fukushima, A., Kojima, S., Hanada, A., Kanno, K., Hayakawa, T., Seto, Y., Kyozuka, J., Yamaguchi, S. and Yamaya, T.
Pant J. in press. (2014)

No.093
NADH-dependent glutamate synthase participated in ammonium assimilation in Arabidopsis root.
Kojima, S., Konishi, N., Beier, M.P., Ishiyama K, Maru, I., Hayakawa, T. and Yamaya, T.
Plant Signal Behav. 9, e29402 (2014)

No.092
Root and shoot transcriptome analysis of two ecotypes of Noccaea caerulescens uncovers the role of NcNramp1 in Cd hyperaccumulation.
Milner, M.J., Mitani-Ueno, N., Yamaji, N., Yokosho, K., Craft, E., Fei, Z., Ebbs, S., Clemencia Zambrano, M., Ma, J.F. and Kochian, L.V.
Pant J. 78, 398-410 (2014)

No.091
Normal root elongation requires arginine produced by argininosuccinate lyase in rice.
Xia, J., Yamaji, N., Che, J., Shen, R.F. and Ma, J.F.
Plant J. 78, 215-226 (2014)

No.090
Physiological and molecular characterization of Si uptake in wild rice species.
Mitani-Ueno, N., Ogai, H., Yamaji, N. and Ma, J.F.
Physiol. Plant. 151, 200-207 (2014)

No.089
Ribosome in a stacked array: Elucidation of the step in translation elongation at which they are stalled during S-adenosyl-L-methionine-induced translation arrest of CGS1 mRNA.
Yamashita, Y., Kadokura, Y., Sotta, N., Fujiwara, T., Takigawa, I, Satake, A., Onouchi, H. and Naito, S.
J. Biol. Chem. 289, 12693-12704 (2014)

No.088
A halt in poly(A) shortening during S-adenosyl-L-methionine-induced translation arrest in CGS1 mRNA of Arabidopsis thaliana.
Yamashita, Y., Lambein, I., Kobayashi, S., Onouchi, H., Chiba, Y. and Naito, S.
Genes Genet. Syst. 88, 241-249 (2013)

No.087
A plasma membrane-localized small peptide is involved in rice aluminum tolerance.
Xia, JX., Yamaji, N. and Ma, J.F.
Plant J. 76, 345-355 (2013)

No.086
Adaptation to acidic soil is achieved by increased cis-acting element numbers regulating ALMT1 expression in Holcus lanatus.
Chen, Z.C., Yokosho, K., Kashino, M., Zhao, F.J., Yamaji, N. and Ma, J.F.
Plant J. 76, 10-23 (2013)

No.085
Overexpression of plasma membrane H+-ATPase in guard cells promotes light-induced stomatal opening and enhances plant growth.
Wang, Y., Noguchi, K., Ono, N., Inoue, S., Terashima, I. and Kinoshita, T.
Proc. Natl. Acad. Sci., USA. 111, 533-538 (2014)

No.084
Syntaxin of plant proteins SYP123 and SYP132 mediate root hair tip growth in Arabidopsis thaliana.
Ichikawa, M., Hirano, T., Enami, K., Fuselier, T., Kato, N., Kwon, C., Voigt, B., Schulze-Lefert, P., Baluska, F. and Sato, M.H.
Plant Cell Physiol 55, 790-800 (2014)

No.083
Essential role of the E3 ubiquitin ligase NOPPERABO1 in schizogenous intercellular space formation in the liverwort Marchantia polymorpha.
Ishizaki, K., Mizutani, M., Shimamura, M., Masuda, A., Nishihama, R. and Kohchi, T.
Plant Cell 25, 4075-4084 (2013)

No.082
NADH-dependent glutamate synthase plays a crucial role in assimilating ammonium in Arabidopsis root.
Konishi, N., Ishiyama, K., Matsuoka, K., Maru, I., Hayakawa, T., Yamaya, T. and Kojima, S.
Physiol. Plant. 152, 138-151 (2014)

No.081
Evidences supporting distinct functions of three cytosolic glutamine synthetases and two NADH-glutamate synthases in rice.
Yamaya, T. and Kusano, M.
J. Exp. Bot. 65, 5519-5525 (2014)

No.080
A member of heavy metal P-type ATPase OsHMA5 is involved in xylem loading of copper in rice.
Deng, F., Yamaji, N., Xia, J. and Ma, J. F.
Plant Physiol. 163, 1353-1362 (2013)

No.079
Using membrane transporters to improve crops for sustainable food production.
Schroeder, J.I., Delhaize, E., Frommer, W.B., Guerinot, M.L., Harrison, M.J., Herrera-Estrella, L., Horie, T., Kochian, L.V., Munn, R., Nishizawa, N.K., Yi-Fang Tsay, Y.-F. and Sanders, D.
Nature. 497, 60-66 (2013)

No.078
Salinity tolerance mechanisms in glycophytes: An overview with the central focus on rice plants.
Horie, T., Karahara, I. and Katsuhara, M.
Rice 5, 11, doi:10.1186/1939-8433-5-11 (2012)

No.077
A node-based switch for preferential distribution of manganese in rice.
Yamaji, N., Sasaki, A., Xia, J.X., Yokosho, K. and Ma, J.F.
Nature Commun. 4, 2442, doi: 10.1038/ncomms3442 (2013)

No.076
Forecasting flowering phenology under climate warming by modelling regulatory dynamics of flowering-time genes.
Satake, A., Kawagoe, T., Saburi, Y., Chiba, Y., Sakurai, G. and Kudoh H.
Nature Commun. 4, 2303, doi: 10.1038/ncomms3303 (2013)

No.075
Cytokinins control endocycle onset by promoting the expression of an APC/C activator in Arabidopsis roots.
Takahashi, N., Kajihara, T., Okamura, C., Kim, Y., Katagiri, Y., Okushima, Y., Matsunaga, S., Hwang, I. and Umeda, M.
Curr. Biol. 23, 1812-1817 (2013)

No.074
Synthesis of very-long-chain fatty acids in the epidermis controls plant organ growth by restricting cell proliferation.
Nobusawa, T., Okushima, Y., Nagata, N., Kojima, M., Sakakibara, H. and Umeda, M.
PLoS Biol. 11(4), e1001531 (2013)

No.073
ATM-mediated phosphorylation of SOG1 is essential for the DNA damage response in Arabidopsis.
Yoshiyama, K.O., Kobayashi, J., Ogita, N., Ueda, M., Kimura, S., Maki, H. and Umeda, M.
EMBO Rep. 14, 817-822 (2013)

No.072
Autophagy contributes to nighttime energy availability for growth in Arabidopsis.
Izumi, M., Hidema, J., Makino, A. and Ishida, H.
Plant Physiol. 161, 1682-1693 (2013)

No.071
TWIN SISTER OF FT, GIGANTEA, and CONSTANS have a positive but indirect effect on blue light-induced stomatal opening in Arabidopsis thaliana.
YAndo, E., Ohnishi, M., Wang, Y., Matsushita, T., Watanabe, A., Hayashi, Y., Fujii, M., Ma, JF., Inoue, S. and Kinoshita, T.
Plant Physiol. 162, 1529-1538 (2013)

No.070
Preferential delivery of zinc to developing tissues in rice is@mediated by P-type heavy metal ATPase OsHMA2.
Yamaji, N., Xia, J., Mitani-Ueno, N., Yokosho, K., and Ma, JF.
Plant Physiol. 162, 927-939 (2013)

No.069
Evolution of the ONSEN retrotransposon family activated upon heat stress in Brassicaceae.
Ito, H., Yoshida. T., Tsukahara, S. and Kawabe, A.
Gene 518, 256-261 (2013)

No.068
Cytosolic glutamine synthetase1;2 is responsible for the primary assimilation of ammonium in rice roots.
Funayama, K., Kojima, S., Tabuchi-Kobayashi, M., Sawa, Y., Nakayama, Y., Hayakawa, T. and Yamaya, T.
Plant Cell Physiol. 54, 934-943 (2013)

No.067
Tuning growth to the environmental demands.
Rymen, B. and Sugimoto, K.
Curr. Opin. Plant Biol. 15, 683-690 (2012)

No.066
Evidence for contribution of autophagy to Rubisco degradation during leaf senescence in Arabidopsis thaliana.
Ono, Y., Wada, S., Izumi, M., Makino, A. and Ishida, H.
Plant Cell Environ. in press. doi: 10.1111/pce.12049.

No.065
The effects of heat induction and the siRNA biogenesis pathway on the transgenerational transposition of ONSEN, a copia-like retratransposon in Arabidopsis thaliana.
Matsunaga, W., Kobayashi, A., Kato, A. and Ito, H.
Plant Cell Physiol. 53, 824-833. (2012)

No.064
Transcriptional repression of the APC/C activator CCS52A1 promotes the active termination of cell growth.
Breuer, C., Morohashi, K., Kawamura, A., Takahashi, N.. Ishida, T., Umeda, M., Grotewold, E. and Sugimoto, K.
EMBO J. 31, 4488-4801. (2012)

No.063
TAWAWA1, a novel regulator of rice inflorescence architecture, functions through the suppression of meristem phase transition.
Yoshida, A., Sasao, M., Yasuno, N., Takagi, K., Daimon, Y., Chen, R., Yamazaki, R., Tokunaga, H., Kitaguchi, Y., Sato, Y., Nagamura, Y., Usijima, T., Kumamaru, T., Iida, S., Maekawa, M. and Kyozuka, J.
Proc. Natl. Acad. Sci., USA. 110, 767-772 (2013)

No.062
Changes in mRNA stability associated with cold stress response in Arabidopsis cells.
Chiba, Y., Mineta, K., Hirai, Y. M., Suzuki, Y., Kanaya, S., Takahashi, H., Onouchi, H., Yamaguchi, J. and Naito, S.
Plant Cell Physiol. in press. DOI: 10.1093/pcp/pcs164 (2012)

No.061
YSL16 is a phloem-localized transporter of the copper-nicotianamine complex that is responsible for copper distribution in rice.
Zheng, L. Q., Yamaji, N., Yokosho, K. and Ma, J. F.
Plant Cell 24, 3767-3782 (2012)

No.060
Functional Characterization of a Silicon Transporter Gene Implicated in Silicon Distribution in Barley.
Yamaji, N., Chiba, Y., Mitani-Ueno, N. and Ma, J. F.
Plant Physiol. 160, 1491-1497 (2012)

No.059
Up-regulation of a magnesium transporter gene OsMGT1 is required for conferring aluminum tolerance in rice.
Chen, Z. C., Yamaji, N., Motoyama, R., Nagamura, Y. and Ma, J. F.
Plant Physiol. 159, 1624-1633 (2012)

No.058
Highly-reproducible ChIP-on-chip analysis to identify genome-wide protein binding and chromatin status in Arabidopsis thaliana.
Kim, J.-M., To, T.K., Tanaka, M., Endo, T.A., Matsui, M., Ishida, J., Robertson, F.C., Toyoda, T. and Seki, M.
"In Methods in Molecular Biology; The Arabdopsis Protocols, 3rd edition. (Edited by Julio Salinas and Jose J. Sanchez-Serrano)". Humana Press. in press. (2012)

No.057
Identification of an EMS-induced causal mutation in a gene required for boron-mediated root development by low-coverage genome re-sequencing in Arabidopsis.
Tabata, R., Kamiya, T, Shigenobu, S., Yamaguchi, K., Yamada, M., Hasebe, M., Fujiwara, T. and Sawa, S.
Plant Signal. Behav. in press. (2012)

No.056
CLE signaling systems during plant development and nematode infection.
Kiyohara, S. and Sawa, S.
Plant Cell Physiol. in press. (2012)

No.055
The function of CLE and other plant peptide hormones during plant root development.
Yamada, M. and Sawa, S.
Curr. Opin. Plant Biol. in press. (2012)

No.054
Kinematic study of root elongation in Arabidopsis thaliana with a novel image-analysis program.
Iwamoto, A., Kondo, E., Fujihashi, H. and Sugiyama, M.
J. Plant Res. in press. DOI 10.1007/s10265-012-0523-5 (2012)

No.053
Characterization of the plasma membrane H+-ATPase in the liverwort Marchantia polymorpha.
Okumura, M., Inoue, S., Takahashi, K., Ishizaki, K., Kohchi, T. and Kinoshita, T.
Plant Physiol. 159, 826-834 (2012)

No.052
Auxin activates the plasma membrane H+-ATPase by phosphorylation during hypocotyl elongation in Arabidopsis thaliana.
Takahashi, K., Hayashi, K. and Kinoshita T.
Plant Physiol. 159, 632-641 (2012)

No.051
An epigenetic integrator: new insight into genome regulation, environmental stress responses and developmental controls by HISTONE DEACETYLASE 6.
Kim, J.-M., To, T. K. and Seki, M.
Plant Cell Physiol. 53: 794-800 (2012)

No.050
Nramp5 is a major transporter responsible for manganese and cadmium uptake in rice
Sasaki, A., Yamaji, N., Yokosho, K. and Ma, J. F.
Plant Cell in press. DOI 10.1105/tpc.112.096925 (2012)

No.049
Control of plant cell cycle by developmental and environmental cues
Komaki, S. and Sugimoto, K.
Plant Cell Physiol. in press. DOI 10.1093/pcp/pcs070 (2012)

No.048
Visualization of auxin-mediated transcriptional activation using a common auxin-responsive reporter system in the liverwort /Marchantia polymorpha/
Ishizaki, K., Nonomura, M., Kato, H., T. Yamato, K. T. and Kohchi, T.
J. Plant Res. in press. DOI 10.1007/s10265-012-0477-7 (2012)

No.047
A chemical biology approach reveals an opposite action between thermospermine and auxin in xylem development in Arabidopsis thaliana.
Yoshimoto, K., Noutoshi, Y., Hayashi, K., Shirasu, K., Takahashi, T. and Motose, H.
Plant Cell Physiol. in press. DOI 10.1007/s11103-012-9892-3 (2012)

No.046
Cloning, functional characterization and heterologous expression@of TaLsi1, a wheat silicon transporter gene.
Montpetit, J., Vivancos, J., Mitani-Ueno, N., Yamaji, N., ReLmus-Borel, W., Belzile, F. Ma, J. F. and BeLlanger, R. R.
Plant Mol. Biol. DOI 10.1007/s11103-012-9892-3 (2012)

No.045
A tonoplast-localized half-size ABC transporter is required for internal detoxification of aluminum in rice.
Huang, C. F., Yamaji, N., Chen, Z. and Ma, J. F.
Plant J. 69: 857-867 (2012)

No.044
A leucine-rich repeat receptor-like kinase gene is involved in the specification of outer cell layers in rice roots.
Huang, C. F., Yamaji, N., Ono, K. and Ma, J. F.@
Plant J. 69: 565-576 (2012)

No.043
Acquisition of aluminium tolerance by modification of a single gene in barley.
Fujii, M., Yokosho, K., Yamaji, N., Saisho, D., Yamane, M., Takahashi, H., Sato, K., Nakazono, M. and Ma, J.F.
Nat. Commun. 3: 713. doi: 10.1038/ncomms1726 (2012)

No.042
GIGAS CELL1, a novel negative regulator of the anaphase-promoting complex/cyclosome, is required for proper mitotic progression and cell fate determination in Arabidopsis.
Iwata, E., Ikeda, S., Matsunaga, S., Kurata, M., Yoshioka, Y., Criqui, M-C., Genschik, P. and Ito, M.
Plant Cell 23: 4382-4393 (2011)

No.041
Cell-cyel control and plant development.
Inagaki, S. and Umeda, M.
Int. Rev. Cell Mol. Biol. 291: 227-261 (2011)

No.040
An Al-inducible MATE gene is involved in external detoxification of Al in rice.
Yokosho, K., Yamaji, N. and Ma, J. F.
Plant J. 68: 1061-1069 (2011)

No.039
OsYSL6 Is involved in the detoxification of excess manganese in rice.
Sasaki, A., Yamaji, N., Xia, J. X. and Ma, J. F.
Plant Physiol. 157: 1832-1840 (2011)

No.038
K+ transport by the OsHKT2;4 transporter from rice with atypical Na+ transport properties and competition in permeation of K+ over Mg2+ and Ca2+ ions.
Horie, T., Brodsky, D. E., Costa, A., Kaneko, T., Lo Schiavo, F., Katsuhara, M. and Schroeder, J. I.
Plant Physiol. 156: 1493-1507 (2011)

No.037
Mutations in MYB3R1 and MYB3R4 cause pleiotropic developmental defects and preferential down-regulation of multiple G2/M-specific genes in Arabidopsis thaliana
Haga, N., Kobayashi, K., Suzuki, T., Maeo, K., Kubo, M., Ohtani, M., Mitsuda, N., Demura, T., Nakamura, K., Jurgens, G. and Ito, M.@
Plant Physiol. 157: 706-717 (2011)

No.036
Characterization of Arabidopsis CTP:3-deoxy-D-manno-2-octulosonate cytidylyltransferase (CMP-KDO synthetase), the enzyme that activates KDO during rhamnogalacturonan II biosynthesis.
Kobayashi, M., Kouzu, N., Inami, A., Toyooka, K., Konishi, Y., Matsuoka, K. and Matoh, T.
Plant Cell Physiol. 52: 1832-1843 (2011)

No.035
Silicon efflux transporters isolated from two pumpkin cultivars contrasting@in Si uptake.
Mitani-Ueno, N., Yamaji, N. and Ma, J. F.
Plant Signaling & Behavior 6F 991-994 (2011)

No.034
dentification of a Cis-Acting Element of ART1, a C2H2-Type Zinc-Finger Transcription Factor for Aluminum Tolerance in Rice.
Tsutsui, T., Yamaji, N. and Ma, J. F.
Plant Physiol. 156: 925|931 (2011)

No.033
High resolution secondary ion mass spectrometry reveals the contrasting subcellular distribution of arsenic and silicon in rice roots.
Moore, K. L., SchroNder, M., Wu, Z. C., Martin, B. G. H., Hawes, C. R., Mcgrath, S. P., Hawkesford, M. J., Ma, J. F., Zhao, F. J. and Grovenor, C. R. M.
Plant Physiol. 156: 913-924 (2011)

No.032
Aromatic/arginine selectivity filter of NIP aquaporins plays a critical role in substrate selectivity for silicon, boron and arsenic.
Mitani-Ueno, N., Yamaji, N., Zhao, F. J. and Ma, J. F. J.
Exp. Bot. 62: 4391-4398 (2011)

No.031
Transport of silicon from roots to panicles in plants.
Ma, J. F., @Yamaji, N. and@Mitani-Ueno, N.
Proc. Jpn. Acad. Ser. B, 87: 377-385. (2011)

No.030
Elevated expression of TcHMA3 plays a key role in the extreme Cd tolerance in a Cd-hyperaccumulating ecotype of Thlaspi caerulescens.
Ueno, D., Milner, M. J., Yamaji, N., Yokosho, K., Koyama, E., Zambrano, M. C., Molly Kaskie, M., Ebbs, S., Kochian, L. V. and Ma, J. F.
Plant J. 66: 852|862 (2011)

No.029
Isolation and functional characterization of an influx@silicon transporter in two pumpkin cultivars contrasting in silicon accumulation.
Mitani, N., Yamaji, N., Ago, Y., Iwasaki, K. and Ma, J. F.
Plant J. 66: 231|240 (2011)

No.028
Further characterization of a rice Si efflux transporter, Lsi2.
Yamaji, N. and Ma, J. F.
Soil Sci. Plant Nutr. 57: 259-564 (2011)

No.027
Condensin II alleviates DNA damage and is essential for Tolerance of boron overload stress in Arabidopsis.
Sakamoto, T., Tsujimoto Inui, Y., Uraguchi, S., Yoshizumi, T., Matsunaga, S., Mastui, M., Umeda, M., Fukui, K., and Fujiwara, T.
Plant Cell in press (doi:10.1105/tpc.111.086314)

No.026
Boron-dependent degradation of NIP5;1 mRNA for acclimation to excess boron conditions in Arabidopsis.
Tanaka, M., Takano, J., Chiba, Y., Lombardo, F., Ogasawara, Y., Onouchi, H., Naito, S. and Fujiwara, T.
Plant Cell in press (doi:10.1105/tpc.111.088351)

No.025
FLOWERING LOCUS T regulates stomatal opening.
Kinoshita, T., Ono, N., Hayashi, Y., Morimoto, S., Nakamura, S., Soda, M., Kato, Y., Ohnishi, M., Nakano, T., Inoue, S. and Shimazaki, K.
Curr. Biol. 21: 1232-1238 (2011)

No.024
Immunohistochemical detection of blue light-induced phosphorylation of the plasma membrane H+-ATPase in stomatal guard cells.
Hayashi, M., Inoue, S., Takahashi, K. and Kinoshita, T.
Plant Cell Physiol. 52: 1238-1248 (2011)

No.023
Mg-chelatase H subunit affects ABA signaling in stomatal guard cells, but is not an ABA receptor in Arabidopsis thaliana
Tsuzuki, T., Takahashi, K., Inoue, S., Okigaki, Y., Tomiyama, M., Hossain, M.A., Shimazaki, K., Murata, Y. and Kinoshita, T.
J. Plant Res. 124: 527-538 (2011)

No.022
Disruption of a novel NADH-glutamate synthase2 gene caused marked reduction in spikelet number of rice.
Tamura, W., Kojima, S., Toyokawa, A., Watanabe, H., Tabuchi-Kobayashi, M., Hayakawa, T. and Yamaya, T.
Front. Plant Nutr. 2, 57 (2011)

No.021
NIMA-related kinases 6, 4, and 5 interact with each other to regulate microtubule organization during epidermal cell expansion in Arabidopsis thaliana
Motose, H., Hamada, T., Yoshimoto, K., Murata, T., Hasebe, M., Watanabe, Y., Hashimoto, T., Sakai, T. and Takahashi, T.
Plant J. 67: 993-1005 (2011)

No.020
Programmed induction of endoreduplication by DNA double-strand breaks in Arabidopsis
Adachi, S., Minamisawa, K., Okushima, Y., Inagaki, S., Yoshiyama, K., Kondou, Y., Kaminuma, E., Kawashima, M., Toyoda, T., Matsui, M., Kurihara, D., Matsunaga, S. and Umeda, M.
Proc. Natl. Acad. Sci., USA. 108: 10004-10009 (2011)

No.019
S-Adenosyl-L-methionine induces compaction of nascent peptide chain inside the ribosomal exit tunnel upon translation arrest in the Arabidopsis CGS1 gene.
Onoue, N., Yamashita, Y., Nagao, N., Goto, D.B., Onouchi, H. and Naito, S.
J. Biol. Chem. 286: 14903-14912 (2011)

No.018
The AP2/ERF Transcription Factor WIND1 Controls Cell Dedifferentiation in Arabidopsis.
Iwase, A., Mitsuda, N., Koyama, T., Hiratsu, K., Kojima, M., Arai, T., Inoue, Y., Seki, M., Sakakibara, H., Sugimoto, K. and Ohme-Takagi, M.
Current biology 21: 508-514 (2011)

No.017
Rice growth adapting to deepwater.
Hattori, Y., Nagai, K and Ashikari, M.
Curr. Opin. Plant Biol. 14: 100-105 (2011)

No.016
Vacuolar Proton Pumps and Aquaporins Involved in Rapid Internode Elongation of Deepwater Rice.
Muto, Y., Segami, S., Hayashi, H., Sakurai, J., Murai-Hatano, M., Hattori, Y., Ashikari, M. and Maeshima, M.
Biosc. Biotechnol. Biochem. 75: 114-122 (2011)

No.015
Development and evaluation of Oryza glaberrima Steud. chromosome segment substitution lines (CSSLs) in the background of O. sativa L. cv. Koshihikari.
Shim, R.A., Angeles, E.R., Ashikari, M. and Takashi, T.
Breeding Science 60: 613-619 (2010)

No.014
Stunt or elongate? Two opposite strategies by which rice adapts to floods.
Nagai, K., Hattori, Y. and Ashikari, M.
J PlantRes. 123: 303-309 (2010)

No.013
SSD1, which encodes a plant-specific novel protein, controls plant elongation by regulating cell division in rice.
Asano,K., Miyao,A., Hirochika,H., Kitano,H.,Matsuoka,M and Ashikari,M.
Phys Biol Sci 86: 265-273 (2010)

No.012
Metabolomics data reveal a crucial role of cytosolic glutamine synthetase 1;1 in coordinating metabolic balance in rice.
Kusano, M., Tabuchi, M., Fukushima, A., Funayama, K., Diaz, C., Kobayashi, M., Hayashi, N., Tsuchiya N. Y., Takahashi, H., Kamata, A., Yamaya, T., and Saito, K.
Plant J. 66: 456-466 (2011)

No.011
FINE CULM1 (FC1) works downstream of strigolactones to inhibit the outgrowth of axillary buds in rice.
Minakuchi, K., Kameoka, H., Yasuno, N., Umehara, M., Luo, L., Kobayashi, K., Hanada, A., Ueno, K., Asami, T., Yamaguchi, S. and Kyozuka, J.
Plant & Cell Physiology 51, 1127-1135 (2010)

No.010
The effect of estimated PAR uncertainties on the physiological processes of biosphere models.
Cho, J., Oki, T., Yeh, P. J.-F., Kanae, S. and Kim, W.
Ecological Modelling 221, 1575-1579 (2010)

No.009
Rice-Arabidopsis FOX line screening with FT-NIR-based fingerprinting for GC-TOF/MS-based metabolite profiling.
Suzuki, M., Kusano, M., Takahashi, H., Nakamura, Y., Hayashi, N., Kobayashi, M., Ichikawa, T., Matsui, M., Hirochika, H. and Saito, K.
Metabolomics 6, 137-145 (2010)

No.008
Consolidating metabolite identifiers to enable contextual and multi-platform metabolomics data analysis.
Redestig, H., Kusano, M., Fukushima, A., Matsuda, F., Saito, K. and Arita, M.
BMC Bioinformatics 11, 214 (2010)

No.007
Comparative metabolomics charts the impact of genotype-dependent methionine accumulation in Arabidopsis thaliana.
Kusano, M., Fukushima, A., Redestig, H., Kobayashi, M., Otsuki, H., Onouchi, H., Naito, S., Hirai, M. Y. and Saito, K.
Amino acids 39, 1013-1021 (2010)

No.006
Metabolomic Screening Applied to Rice FOX Arabidopsis Lines Leads to the Identification of a Gene-Changing Nitrogen Metabolism.
Albinsky, D., Kusano, M., Higuchi, M., Hayashi, N., Kobayashi, M., Fukushima, A., Mori, M., Ichikawa, T., Matsui, K., Kuroda, H., Horii, Y., Tsumoto, Y., Sakakibara, H., Hirochika, H., Matsui, M. and Saito, K.
Molecular Plant 3, 125-142 (2010)

No.005
Ammonium triggers lateral root branching in Arabidopsis in an AMT1;3-dependent manner.
Lima, J., Kojima, S., Takahashi, H. and von WireLn, N.
Plant Cell 22, 3621-3633 (2010)

No.004
Fine-mapping of qRL6.1, a major QTL for root length of rice seedlings grown under a wide range of NH4+ concentration in hydroponic conditions.
Obara, M., Tamura, W., Ebitani, T., Yano, M., Sato, T. and Yamaya, T.
Theoretical and Applied Genetics 121, 535-547 (2010)

No.003
Reverse genetics approach to characterize a function of NADH-glutamate synthase1 in rice plants.
Tamura, W., Hidaka, Y., Tabuchi, M., Kojima, S., Hayakawa, T., Sato, T., Obara, M., Kojima, M., Sakakibara, H. and Yamaya, T.
Amino Acids 39, 1003-1012 (2010)

No.002
Plasma membrane-localized transporter for aluminum in rice.
Xia, J. X., Kasai, T., Yamaji, N. and Ma, J. F.
Proceedings of the National Academy of Sciences, U.S.A. doi/10.1073/pnas.1004949107

No.001
Biochemical characterization of in vitro phosphorylation and dephosphorylation of the plasma membrane H+-ATPase.
Hayashi, Y., Nakamura, S., Takahashi, Y., Shimazaki, K. and Kinoshita, T.
Plant & Cell Physiology 51, 1186-1196 (2010)