主な発表論文など｜植物環境突破力

成果報告

各班員の業績リスト

馬　建鋒

Milner M, Mitani-Ueno N, Yamaji N, Yokosho K, Craft E, Fei Z, Ebbs S, Zambrano M, Ma JF, Kochian L (2014) Root and shoot transcriptome analysis of two ecotypes of Noccaea caerulescens uncovers the role of NcNramp1 in Cd hyperaccumulation. Plant J (in press)

Xia JX, Yamaji N, Che J, Shen R, Ma JF (2014) Normal root elongation requires arginine produced by argininosuccinate lyase in rice. Plant J (in press)

Mitani-Ueno N, Ogai H, Yamaji N, Ma JF (2013) Physiological and molecular characterization of Si uptake in wild rice species. Physiol Plant doi:10.1111/ppl.12125.

Yamaji N, Sasaki A, Xia JX, Yokosho K, Ma JF (2013) A node-based switch for preferential distribution of manganese in rice. Nat Commun 4, 2442. doi: 10.1038/ncomms3442.

Deng FL, Yamaji N, Xia JX, Ma JF (2013) A member of heavy metal P-type ATPase OsHMA5 is involved in xylem loading of copper in rice. cPlant Physiol 163, 1353-1362.

Chen ZC, Fujii Y, Yamaji N, Masuda S, Takemoto Y, Kamiya T, Yusuyin Y, Iwasaki K, Kato S, Maeshima M, Ma JF, Ueno D (2013) Mn tolerance in rice is mediated by MTP8.1, a member of the cation diffusion facilitator family. J Exp Bot 64, 4375-4387.

Chen ZC, Ma JF (2013) Magnesium transporters and their role in Al tolerance in plants. Plant Soil 368, 51-56.

Xia JX, Yamaji N, Ma JF (2013) A plasma membrane-localized small peptide is involved in rice aluminum tolerance. Plant J 76, 345-355.

Chen ZC, Yokosho K, Kashino M, Zhao FJ, Yamaji N, Ma JF (2013) Adaptation to acidic soil is achieved by increased cis-acting element numbers regulating ALMT1 expression in Holcus lanatus. Plant J 76, 10-23.

Ando E, Ohnishi M, Wang Y, Matsushita T, Watanabe A, Hayashi Y, Fujii M, Ma JF, Inoue S, Kinoshita T (2013) TWIN SISTER OF FT, GIGANTEA, and CONSTANS have a positive but indirect effect on blue light-induced stomatal opening in Arabidopsis thaliana. Plant Physiol 162,1529-1538.

Yamaji N, Xia JX, Mitani-Ueno N, Yokosho K, Ma JF (2013) Preferential delivery of Zn to developing tissues in rice is mediated by a P-type ATPases, OsHMA2. Plant Physiol 162, 927-939.

Tsutsui T, Yamaji N, Huang C H, Motoyama R, Nagamura Y, Ma JF (2012) Comparative genome-wide transcriptional analysis of Al-responsive genes reveals novel Al tolerance mechanisms in rice. PLoS ONE 7(10), e48197. doi:10.1371/journal.pone.0048197.

Perez-Castro R, Kasai K, Gainza-Cortes F, Ruiz-Lara S, Casaretto JA, Pena-Cortes H, Tapia J, Fujiwara T, Gonzalez E (2012) VvBOR1, the grapevine ortholog of AtBOR1 encodes an efflux boron transporter that is differentially expressed through reproductive development of Vitis vinifera L. Plant Cell Physiol 53, 485-494.

Delhaize E, Ma JF, Ryan PR (2012) Transcriptional regulation of aluminium tolerance genes. Trends Plant Sci 17, 341-348.

Yamaji N, Chiba Y, Mitani-Ueno N, Ma JF (2012) Functional characterization of a silicon transporter gene implicated in silicon distribution in barley. Plant Physiol 160, 1491-1497.

Zheng LQ, Yamaji N, Yokosho K, Ma JF (2012) YSL16 is a phloem-localized transporter of the copper-nicotianamine complex that is responsible for copper distribution in rice. Plant Cell 24, 3767-3782.

Sasaki A, Yamaji N, Yokosho K, Ma JF (2012) Nramp5 is a major transporter responsible for manganese and cadmium uptake in rice. Plant Cell 24, 2155-2167.

Fujii M, Yokosho K, Yamaji N, Saisho D, Yamane M, Takahashi H, Sato K, Nakazono M, Ma JF (2012) Acquisition of aluminium tolerance by modification of a single gene in barley. Nat Commun 3, 713.

Chen ZC, Yamaji N, Motoyama R, Nagamura, Y, Ma JF (2012) Up-regulation of a magnesium transporter gene OsMGT1 is required for conferring aluminum tolerance in rice. Plant Physiol 159, 1624-1633.

Montpetit J, Vivancos J, Mitani-Ueno N, Yamaji N, Remus-Borel W, Belzile F, Ma JF, Belanger RR (2012) Cloning, functional characterization and heterologous expression of TaLsi1, a wheat silicon transporter gene. Plant Mol Biol 79, 35-46.

Huang CF, Yamaji N, Chen Z, Ma JF (2012) A tonoplast-localized half-size ABC transporter is required for internal detoxification of aluminum in rice. Plant J 69, 857-867.

Huang CF, Yamaji N, Ono K, Ma JF (2012) A leucine-rich repeat receptor-like kinase gene is involved in the specification of outer cell layers in rice roots. Plant J 69, 565-576.

Sasaki A, Yamaji N, Xia JX, Ma JF (2011) OsYSL6 is involved in the　detoxification of excess manganese in rice. Plant Physiol 157, 1832-1840.

Yokosho K, Yamaji N, Ma JF (2011) An Al-inducible MATE gene is involved in external detoxification of Al in rice. Plant J 68, 1061-1069.

Ma JF, Yamaji N, Mitani-Ueno N (2011) Transport of silicon from roots to panicles in plants. Proc Jpn Acad Ser B Phys Biol Sci 87, 377-385.

Tsutsui T, Yamaji N, Ma JF (2011) Identification of a cis-acting element of ART1, a C2H2-type zinc finger transcription factor for aluminum tolerance in rice. Plant Physiol 156, 925-931.

Mitani-Ueno N, Yamaji N, Zhao FJ, Ma JF (2011) Aromatic/arginine selectivity filter of NIP aquaporins plays a critical role in substrate selectivity for silicon, boron and arsenic. J Exp Bot 62, 4391-4398.

Yamaji N, Ma JF (2011) Further characterization of a rice Si efflux transporter, Lsi2. Soil Sci Plant Nutr 57, 259-564.

Ueno D, Milner M, Yamaji N, Yokosho K, Koyama E, Zambrano C, Kaskie M, Ebbs S, Kochian L, Ma JF (2011) Elevated expression of TcHMA3 plays a key role in the extreme Cd tolerance in a Cd-hyperaccumulating ecotype of Thlaspi caerulescens. Plant J 66, 852-862.

Mitani N, Yamaji N, Ago Y, Iwasaki K, Ma JF. (2011) Isolation and functional characterization of an influx silicon transporter in two pumpkin cultivars contrasting in Si accumulation. Plant J 66, 231-240.

Xia JX, Yamaji N, Kasai T, Ma JF (2010) Plasma membrane-localized transporter for aluminum in rice. Proc Natl Acad Sci USA 107,18381-18385.

藤原　徹（研究分担者）

Kasai K, Takano J, Miwa K, Toyoda A, Fujiwara T. (2011)High boron-induced ubiquitination regulates vacuolar sorting of the BOR1 borate transporter in Arabidopsis thaliana. J Biol Chem 286, 6175-6183.

Tanaka M, Takano J, Chiba Y, Lombardo F, Ogasawara Y, Onouchi H, Naito S, Fujiwara T (2011) Boron dependent degradation of NIP5;1 mRNA for acclimation to excess boron conditions. Plant Cell 23, 3547-3559.

Sakamoto T, Tsujimoto-Inui Y, Uraguchi S, Yoshizumi T, Matsunaga S, Mastui M, Umeda M, Fukui K, Fujiwara T (2011) Condensin II alleviates DNA damage and is essential for tolerance of B overload stress in Arabidopsis thaliana. Plant Cell 23, 3533-3546.

木下　俊則

Hayashi Y, Takahashi K, Inoue S, Kinoshita T (2014) Abscisic acid suppresses hypocotyl elongation by dephosphorylating plasma membrane H⁺-ATPase in Arabidopsis thaliana. Plant Cell Physiol (in press)

Wang Y, Noguchi K, Ono N, Inoue S, Terashima I, Kinoshita T (2014) Overexpression of plasma membrane H⁺-ATPase in guard cells promotes light-induced stomatal opening and enhances plant growth. Proc Natl Acad Sci USA 111, 533-538.

Tsuzuki T, Takahashi K, Tomiyama M, Inoue S, Kinoshita T (2013) Overexpression of the Mg-chelatase H subunit in guard cells confers drought tolerance via promotion of stomatal closure in Arabidopsis thaliana. Front Plant Sci 4, 440.

Ando E, Ohnishi M, Wang Y, Matsushita T, Watanabe A, Hayashi Y, Fujii M, Ma JF, Inoue S, Kinoshita T (2013) TWIN SISTER OF FT, GIGANTEA, and CONSTANS have a positive but indirect effect on blue light-induced stomatal opening in Arabidopsis thaliana. Plant Physiol 162, 1529-1538.

Takahashi K, Hayashi K, Kinoshita T (2012) Auxin activates the plasma membrane H⁺-ATPase by phosphorylation during hypocotyl elongation in Arabidopsis thaliana. Plant Physiol 159, 632-641.

Okumura M, Inoue S, Takahashi K, Ishizaki K, Kohchi T, Kinoshita T (2012) Characterization of the plasma membrane H⁺-ATPase in the liverwort Marchantia polymorpha. Plant Physiol 159, 826-834.

Okumura M, Takahashi K, Inoue S, Kinoshita T (2012) Evolutionary appearance of the plasma membrane H⁺-ATPase containing a penultimate threonine in the bryophyte. Plant Sig Behav 7, 979-982.

Kinoshita T, Ono N, Hayashi Y, Morimoto S, Nakamura S, Soda M, Kato Y, Ohnishi M, Nakano T, Inoue S, Shimazaki K (2011) FLOWERING LOCUS T regulates stomatal opening. Curr Biol 21, 1232-1238.

Hayashi M, Inoue S, Takahashi K, Kinoshita T (2011) Immunohistochemical detection of blue light-induced phosphorylation of the plasma membrane H⁺-ATPase in stomatal guard cells. Plant Cell Physiol 52, 1238-1248.

Tsuzuki T, Takahashi K, Inoue S, Okigaki Y, Tomiyama M, Hossain MA, Shimazaki K, Murata Y, Kinoshita T (2011) Mg-chelatase H subunit affects ABA signaling in stomatal guard cells, but is not an ABA receptor in Arabidopsis thaliana. J Plant Res 124, 527-538.

篠崎　和子

Nakashima K, Yamaguchi-Shinozaki K (2013) ABA signaling in stress-response and seed development. Plant Cell Rep 32, 959-70.

Morimoto K, Mizoi J, Qin F, Kim JS, Osakabe Y, Shinozaki K, Yamaguchi-Shinozaki K (2013) Stabilization of Arabidopsis DREB2A is required but not sufficient for the induction of target genes under conditions of stress. PloS One 23;8(12): e80457.

Osakabe Y, Arinaga N, Umezawa T, Katsura S, Nagamachi K, Tanaka H, Ohiraki H, Yamada K, Seo S, Abo M, Yoshimura E, Shinozaki K, Yamaguchi-Shinozaki K (2013) Osmotic stress responses and plant growth controlled by potassium transporters in Arabidopsis. Plant Cell 25, 609-624.

Mizoi J, Ohori T, Moriwaki T, Kidokoro S, Todaka D, Maruyama K, Kusakabe K, Osakabe Y, Shinozaki K, Yamaguchi-Shinozaki K (2012) GmDREB2A;2, a canonical DREB2-type transcription factor in soybean, is post-translationally regulated and mediates DRE-dependent gene expression. Plant Physiol 161, 346-361.

Kim JS, Mizoi J, Kidokoro S, Maruyama K, Nakajima J, Nakashima K, Mitsuda N, Takiguchi Y, Ohme-Takagi M, Kondou Y, Yoshizumi T, Matsui M, Shinozaki K, Yamaguchi-Shinozaki K (2012) Arabidopsis GROWTH-REGULATING FACTOR 7 functions as a transcriptional repressor of ABA- and osmotic stress-responsive genes including DREB2A. Plant Cell 24, 3393-3405.

Fujita Y, Yoshida T, Yamaguchi-Shinozaki K (2012) Pivotal role of the AREB/ABF-SnRK2 pathway in ABRE-mediated transcription in response to osmotic stress in plants. Physiol Plant 147, 15-27.

Maruyama K, Todaka D, Mizoi J, Yoshida T, Kidokoro S, Matsukura S, Takasaki H, Sakurai T, Yamamoto YY, Yoshiwara K, Kojima M, Sakakibara H, Shinozaki K, Yamaguchi-Shinozaki K (2012) Identification of cis-acting promoter elements in cold- and dehydration-induced transcriptional pathways in Arabidopsis, rice and soybean. DNA Res 9, 37-49.

Mizoi J, Shinozaki K, Yamaguchi-Shinozaki K (2011) AP2/ERF family transcription factors in plant abiotic stress responses. Biochim Biophys Acta 1819, 86-96.

Qin F, Shinozaki K, Yamaguchi-Shinozaki K (2011) Achievements and challenges in understanding plant abiotic stress responses and tolerance. Plant Cell Physiol 52, 1569-1582.

Fujita Y, Fujita M, Shinozaki K, Yamaguchi-Shinozaki K (2011) ABA-mediated transcriptional regulation in response to osmotic stress in plants. J Plant Res 124, 509-525.

Kodaira KS, Qin F, Tran LS, Maruyama K, Kidokoro S, Fujita Y, Shinozaki K, Yamaguchi-Shinozaki K (2011) Arabidopsis Cys2/His2 zinc-finger proteins AZF1 and AZF2 negatively regulate abscisic acid-repressive and auxin-inducible genes under abiotic stress conditions. Plant Physiol 157, 742-756.

Yamada K, Kanai M, Osakabe Y, Ohiraki H, Shinozaki K, Yamaguchi-Shinozaki K (2011) The monosaccharide absorption activity of Arabidopsis roots depends on the expression profiles of transporter genes under high salinity conditions. J Biol Chem 286, 43577-43586.

Kim JS, Mizoi J, Yoshida T, Fujita Y, Nakajima J, Ohori T, Todaka D, Nakashima K, Hirayama T, Shinozaki K, Yamaguchi-Shinozaki K (2011) An ABRE promoter sequence is involved in osmotic stress-responsive expression of the DREB2A gene, which encodes a transcription factor regulating drought-inducible genes in Arabidopsis. Plant Cell Physiol 52, 2136-2146.

Yoshida T, Ohama N, Nakajima J, Kidokoro S, Mizoi J, Nakashima K, Maruyama K, Kim J-M, Seki M, Todaka D, Osakabe Y, Sakuma Y, Schoffl F, Shinozaki K, Yamaguchi-Shinozaki K (2011) Arabidopsis HsfA1 transcription factors function as the main positive regulators in heat shock-responsive gene expression. Mol Genet Genomics 286, 321-332.

内藤　哲

Yamashita Y, Kadokura Y, Sotta N, Fujiwara T, Takigawa I, Satake A, Onouchi H, Naito S (2014) Ribosomes in a stacked array: Elucidation of the step in translation elongation at which they are stalled during S-adenosyl-L-methionine-induced translation arrest of CGS1 mRNA. J Biol Chem (in press)

Miwa K, Wakuta S, Takada S, Ide K, Takano J, Naito S, Omori H, Matsunaga T, Fujiwara T. (2013) Roles of BOR2, a boron exporter, in cross linking of rhamnogalacturonan II and root elongation under boron limitation in Arabidopsis. Plant Physiol 163, 1699-1709.

Yamashita Y, Lambein I, Kobayashi S, Onouchi H, Chiba Y, Naito S (2013) A halt in poly(A) shortening during S-adenosyl-L-methionine-induced translation arrest in CGS1 mRNA of Arabidopsis thaliana. Genes Genet Syst 88, 241-249.

Chiba Y, Mineta K, Hirai MY, Suzuki Y, Kanaya S, Takahashi H, Onouchi H, Yamaguchi J, Naito S (2013) Changes in mRNA stability associated with cold stress in Arabidopsis cells. Plant Cell Physiol 54, 180-194.

Tanaka M, Takano J, Chiba Y, Lombardo F, Ogasawara Y, Onouchi H, Naito S, Fujiwara T (2011) Boron-dependent degradation of NIP5;1 mRNA for acclimation to excess boron conditions in Arabidopsis. Plant Cell 23, 3547-3559.

Murota K, Hagiwara-Komoda Y, Komoda K, Onouchi H, Ishikawa M, Naito S (2011) Arabidopsis cell-free extract, ACE, a new in vitro translation system derived from Arabidopsis callus cultures. Plant Cell Physiol 52, 1443-1453.

Onoue N, Yamashita Y, Nagao N, Goto DB, Onouchi H, Naito S (2011) S-Adenosyl-L-methionine induces compaction of nascent peptide chain inside the ribosomal exit tunnel upon translation arrest in the Arabidopsis CGS1 gene. J Biol Chem 286, 14903-14912.

山谷　知行

Yamaya T, Kusano M (2014) Evidences supporting distinct functions of three cytosolic glutamine synthetases and two NADH-glutamate synthases in rice. J Exp Bot (in press)

Konishi N, Ishiyama K, Matsuoka K, Maru I, Hayakawa T, Yamaya T, Kojima S (2014) NADH-dependent glutamate synthase plays a crucial role in assimilating ammonium in Arabidopsis root. Physiol Plant (in press)

Funayama K, Kojima S, Tabuchi-Kobayashi M, Sawa Y, Nakayama Y, Hayakawa T, Yamaya, T. (2013) Cytosolic glutamine synthetase1;2 is responsible for the primary assimilation of ammonium in rice roots. Plant Cell Physiol 54, 934-943.

Tamura W, Kojima S, Toyokawa A, Watanabe H, Tabuchi-Kobayashi M, Hayakawa T, Yamaya T (2011) Disruption of a novel NADH-glutamate synthase2 gene caused marked reduction in spikelet number of rice. Front Plant Sci 2, 57.

Kusano M, Tabuchi M, Fukushima A, Funayama K, Diaz C, Kobayashi M, Hayashi N, Tsuchiya NY, Takahashi H, Kamata A, Yamaya T, Saito K (2011) Metabolomics data reveal a crucial role of cytosolic glutamine synthetase 1;1 in coordinating metabolic balance in rice. Plant J 66, 456-466.

芦苅　基行

Furuta T, Uehara K, Shim R, Shim J, Ashikari M, Takashi T (2014) Development and evaluation of chromosome segment substitution lines (CSSLs) carrying chromosome segments derived from Oryza rufipogon in the genetic background of Oryza sativa L. Breed Sci 63, 1-8.

Nagai K, Kuroha T, Ayano M, Kurokawa Y, Angeles-Shim R, Shim J-H, Yasui H, Yoshimura A, Ashikari M (2012) Two novel QTLs regulate internode elongation in deepwater rice during the early vegetative stage. Breed Sci 62, 178-185.

Luo L, Li W, Miura K, Ashikari M, Kyozuka J (2012) Control of tiller growth of rice by OsSPL14 and strigolactones, which work in two independent pathways. Plant Cell Physiol 53, 1793-1801.

Asano K, Yamasaki M, Takuno S, Miura K, Katagiri S, Ito T, Doi K, Wu J, Ebana K, Matsumoto T, Innan H, Kitano H, Ashikari M, Matsuoka M (2011) Artificial selection for a green revolution gene during japonica rice domestication. Proc Natl Acad Sci USA 108, 11034-11039.

梅田　正明

Okushima Y, Shimizu K, Ishida T, Sugimoto K, Umeda M (2014) Differential regulation of B2-type CDK accumulation in Arabidopsis roots. Plant Cell Rep doi: 10.1007/s00299-014-1581-z.

Takatsuka H, Umeda M (2014) Hormonal control of cell division and elongation along differentiation trajectories in roots. J Exp Bot doi: 10.1093/jxb/ert485.

Yi D, Kamei CLA, Cools T, Vanderauwera S, Takahashi N, Okushima Y, Eekhout T, Yoshiyama KO, Larkin J, Van den Daele H, Conklin P, Britt A, Umeda M, De Veylder L (2014) The Arabidopsis thaliana SIAMESE-RELATED cyclin-dependent kinase inhibitors SMR5 and SMR7 control the DNA damage checkpoint in response to reactive oxygen species. Plant Cell 26, 296-309.

Takahashi N, Kajihara T, Okamura C, Kim Y, Katagiri Y, Okushima Y, Matsunaga S, Hwang I, Umeda M (2013) Cytokinins control endocycle onset by promoting the expression of an APC/C activator in Arabidopsis roots. Curr Biol 23, 1812-7.

Yoshiyama-Okamoto K, Kobayashi J, Ogita N, Ueda M, Kimura S, Maki H, Umeda M (2013) ATM-mediated phosphorylation of SOG1 is essential for the DNA damage response in Arabidopsis. EMBO Rep doi: 10.1038/embor.2013.112.

Nobusawa T, Okushima Y, Nagata N, Kojima M, Sakakibara H, Umeda M (2013) Synthesis of very-long-chain fatty acids in the epidermis controls plant organ growth by restricting cell proliferation. PLoS Biol 11(4): e1001531.

Nobusawa T, Okushima Y, Nagata N, Kojima M, Sakakibara H, Umeda M (2013) Restriction of cell proliferation in internal tissues via the synthesis of very-long-chain fatty acids in the epidermis. Plant Signal Behav 8(8): e25232.

Takahashi N, Kong S, Umeda M (2013) Dof transcription factors control the expression of the anaphase promoting complex/cyclosome activator CCS52A1. Plant Biotechnol 30, 407-410.

Breuer C, Morohashi K, Kawamura A, Takahashi N, Ishida T, Umeda M, Grotewold E, Sugimoto K (2012) Transcriptional repression of the APC/C activator CCS52A1 contributes to the active termination of cell growth. EMBO J 31, 4488-4501.

Nobusawa T, Umeda M (2012) Very-long-chain fatty acids have an essential role in plastid division by controlling Z-ring formation in Arabidopsis thaliana. Genes Cells 17, 709-719.

Sakamoto T, Tsujimoto-Inui Y, Uraguchi S, Yoshizumi T, Matsunaga S, Matsui M, Umeda M, Fukui K, Fujiwara T (2011) Condensin II alleviates DNA damage and is essential for tolerance of B overload stress in Arabidopsis thaliana. Plant Cell 23, 3533-3546.

Endo M, Nakayama S, Umeda-Hara C, Ohtsuki N, Saika H, Umeda M, Toki S (2011) CDKB2 is involved in mitosis and DNA damage response in rice. Plant J 69, 967-977.

Adachi S, Minamisawa K, Okushima Y, Inagaki S, Yoshiyama K, Kondou Y, Kaminuma E, Kawashima M, Toyoda T, Matsui M, Kurihara D, Matsunaga S, Umeda M (2011) Programmed induction of endoreduplication by DNA double-strand breaks in Arabidopsis. Proc Natl Acad Sci USA 108, 10004-10009.

Okushima Y, Inamoto H, Umeda M (2011) A high concentration of nitrate causes temporal inhibition of lateral root growth by suppressing cell proliferation. Plant Biotechnol 28, 413-416.

Inagaki S, Umeda M (2011) Cell-cycle control and plant development. Int Rev Cell Mol Biol 291, 227-261.

経塚　淳子

Kyozuka J, Tokunaga H, Yoshida A. (2014) Control of grass inflorescence form by the fine-tuning of meristem phase change. Curr Opin Plant Biol 17, 110-115.

Yoshida A, Sasao M, Yasuno N, Takagi K, Daimon Y, Chen R, Yamazaki R, Tokunaga H, Kitaguchi Y, Sato Y, Nagamura Y, Usijima T, Kumamaru T, Iida S, Maekawa M, Kyozuka J (2013)TAWAWA1, a novel regulator of rice inflorescence architecture, functions through the suppression of meristem phase transition. Proc Natl Acad Sci USA 110, 767-772.

Seto Y, Kameoka H, Yamaguchi S, Kyozuka J (2012) Recent advances in strigolactone research: chemical and biological aspects. Plant Cell Physiol 53, 1843-1853.

Luo L, Li W, Miura K, Ashikari M, Kyozuka J (2012) Control of tiller growth of rice by OsSPL14 and strigolactones, which work in two independent pathways. Plant Cell Physiol 53, 1793-1801.

Kobayashi K, Yasuno N, Sato Y, Yoda M, Yamazaki R, Kimizu M, Yoshida H, Nagamura Y, Kyozuka J (2012) Inflorescence meristem identity in rice is specified by overlapping functions of three AP1/FUL-like MADS box genes and PAP2, a SEP MADS box gene. Plant Cell 24, 1848-1859.

杉本　慶子

Breuer C, Braidwood L, Sugimoto K (2014) Endocycling in the path of plant development. Curr Opin Plant Biol 17, 78-85.

Braidwood L, Breuer C, Sugimoto K (2014) My Body is a Cage: Mechanisms and Modulation of Plant Cell Growth. New Phytologist 201, 388-402.

Ikeuchi M, Sugimoto K, Iwase A. (2013) Plant callus: mechanisms of induction and repression. Plant Cell 25, 3159-3173.

Schneider K, Breuer C, Kawamura A, Jikumaru Y, Hanada A, Fujioka S, Ichikawa T, Kondou Y, Minami M, Kamiya Y, Yamaguchi S, Sugimoto K (2012) Arabidopsis PIZZA has the capacity to acylate brassinosteroids. PLoS ONE 7, e46805.

Komaki S and Sugimoto K (2012) Control of the plant cell cycle by developmental and environmental cues. Plant Cell Physiol 53, 953-964.

Rymen B, Sugimoto K (2012) Tuning growth to the environmental demands. Curr Opin Plant Biol 15, 683-690.

Breuer C, Morohashi K, Kawamura A, Takahashi N, Ishida T, Umeda M, Grotewold E, Sugimoto K (2012) Transcriptional repression of the APC/C activator CCS52A1 promotes the active termination of cell growth. EMBO J 31, 4488-4501.

Komaki S, Sugimoto K (2012) Control of the plant cell cycle by developmental and environmental cues. Plant Cell Physiol 53, 953-964

Kobayashi K, Baba S, Obayashi T, Sato M, Toyooka K, Keraenen M, Eva-Mari A, Fukaki H, Ohta H, Sugimoto K, Masuda T (2012) Regulation of root greening by light and auxin/cytokinin signaling in Arabidopsis. Plant Cell 24, 1081-1095.

Iwase A, Ohme-Takagi M, Sugimoto K (2011) WIND1: A key molecular switch for plant cell dedifferentiation. Plant Sig Behav 6, 1943-1945.

佐竹　暁子

Feugier GF, Satake A (2013) Hyperbolic features of the circadian clock oscillations can explain linearity in leaf starch dynamics and adaptation of plants to diverse light and dark cycles. Ecol Model (in press)

Satake A, Kawagoe T, Saburi Y, Chiba Y, Sakurai G, Kudoh H (2013) Forecasting flowering phenology under calimte warming by regulatory dynamics of flowering-time genes. Nat Commun doi: 10.1038/ncomms3303.

Francois GF, Satake A (2013) Dynamical feedback between circadian clock and sucrose availability explains adaptive response of starch metabolism to various photoperiods. Front Plant Sci 3, 1-11.

Fujie FG, Kinoshita T, Satake A (2012) Proceedings of IEEE 4th International Symposium on Plant Growth Modeling, Simulation, Visualization and Applications 109-116.

沖　大幹

Cho J, Kim W, Miyazaki S, Komori D, Kim H, Han K-S, Kanae S, Oki T (2013) Difference in the Priestley-Taylor coefficients at two different heights of a tall micrometeorological tower. Agric For Meteorol 180, 97-101.

Pokhrel YN, Hanasaki N, Yeh P J-F, Yamada TJ, Kanae S, Oki T (2012) Model estimates of sea-level change due to anthropogenic impacts on terrestrial water storage. Nature Geosci doi: 10.1038/Ngeo1476

石崎　公庸

Ishizaki K, Mizutani M, Shimamura M, Masuda A, Nishihama R, Kohchi T (2013) Essential role of the E3 ubiquitin ligase NOPPERABO1 in schizogenous intercellular space formation in the liverwort Marchantia polymorpha. Plant Cell 25, 4075-4084.

Kanazawa T, Ishizaki K, Kohchi T, Hanaoka M, Tanaka K (2013) Characterization of four nuclear-encoded plastid RNA polymerase sigma factor genes in the liverwort Marchantia polymorpha: Blue-light and multiple-stress responsive SIG5 was acquired early in the emergence of terrestrial plants. Plant Cell Physiol 54, 1736-1748.

Ogasawara Y, Ishizaki K, Kohchi T, Kodama Y (2013) Cold-induced organelle relocation in the liverwort Marchantia polymorpha L. Plant Cell Environ 36, 1520-1528.

Ishizaki K, Johzuka-Hisatomi Y, Ishida S, Iida S, Kohchi T (2013) Homologous recombination-mediated gene targeting in the liverwort Marchantia polymorpha. Sci Rep 3, 1532.

Kubota A., Ishizaki K, Hosaka M, Kohchi T (2012) Efficient Agrobacterium-mediated transformation of the liverwort Marchantia polymorpha using regenerating thalli. Biosc Biotechnol Biochem 77, 167-172.

Ishizaki K, Nonomura M, Kato H, Yamato KT, Kohchi T (2012) Visualization of auxin-mediated transcriptional activation using a common auxin-responsive reporter system in the liverwort Marchantia polymorpha. J Plant Res 125, 826-834.

Okumura M, Inoue S, Takahashi K, Ishizaki K, Kohchi T, Kinoshita T (2012) Characterization of the plasma membrane H⁺-ATPase in the liverwort Marchantia polymorpha. Plant Physiol 159, 826-834.

石田　宏幸

Ishida H, Izumi M, Wada S, Makino A (2014) Roles of autophagy in chloroplast recycling. Biochim Biophys Acta-Bioenerg 1837, 512-521.

Izumi M, Hiema J, Ishida H (2013) Deficiency of autophagy leads to significant changes of metabolic profiles in Arabidopsis. Plant Sig Behav 8: 8, e25023.

Izumi M, Hidema J, Makino A, Ishida H (2013) Autophagy contributes to nighttime energy availability for growth in Arabidopsis. Plant Physiol 161, 1682-1693.

Ono Y, Wada S, Izumi M, Makino A, Ishida H (2013) Evidence for contribution of autophagy to the Rubisco degradation during leaf senescence in Arabidopsis. Plant Cell Environ 36, 1147-1159.

Izumi M, Tsunoda H, Suzuki Y, Makino A, Ishida H (2012) RBCS1A and RBCS3B, two major members within the Arabidopsis RBCS multigene family, function to yield sufficient Rubisco content for leaf photosynthetic capacity. J Exp Bot 63, 2159-2170.

伊藤　秀臣

Ito H (2013) Small RNAs and regulation of transposons in plants. Genes Genet Syst 88, 3-7.

Ito H, Yoshida T, Tsukahara S, Kawabe A (2013) Evolution of the ONSEN retrotransposon family activated upon heat stress in Brassicaceae. Gene 518, 256-261.

Matsunaga W, Kobayashi A, Kato A, Ito H (2012) The effects of heat induction and the siRNA biogenesis pathway on the transgenerational transposition of ONSEN, a copia-like retratransposon in Arabidopsis thaliana. Plant Cell Physiol 53, 824-833.

Ito H (2012) Small RNAs and transposon silencing in plants. Dev Growth Differ 54, 100-107.

伊藤　正樹

Araki S, Machida Y, Ito M (2012) Virus-induced gene silencing of NtmybA1 and NtmybA2 causes incomplete cytokinesis and reduced shoot elongation in Nicotiana benthamiana. Plant Biotech 29, 483-487.

Iwata E, Ikeda S, Abe, N, Kobayashi, A, Matsunaga S, Kurata M, Yoshioka Y, Criqui MC, Genschik P, Ito, M. (2012) Roles of GIG1 and UVI4 in genome duplication in Arabidopsis thaliana. Plant Sig Behav 7, 1079 -1081.

Iwata E, Ikeda S, Matsunaga S, Kurata M, Yoshioka Y, Criqui M-C, Genschik P, Ito M (2011) GIGAS CELL1, a novel negative regulator of the anaphase-promoting complex/cyclosome, is required for proper mitotic progression and cell fate determination in Arabidopsis. Plant Cell 23, 4382-4393.

Haga N, Kobayashi K, Suzuki T, Maeo K, Kubo M, Ohtani M, Mitsuda N, Demura T, Nakamura K, Juergens G, Ito M (2011) Mutations in MYB3R1 and MYB3R4 cause pleiotropic developmental defects and preferential down-regulation of multiple G2/M-specific genes in Arabidopsis thaliana. Plant Physiol 157, 706-717.

岩元　明敏

岩元明敏, 杉山宗隆（2013）顕微鏡画像を用いた根端成長の数理モデル解析. Plant Morphol 25, 67-71. (招待レビュー）

Iwamoto A, Inoue T （2013）Variation in shoot organization of Cynodon dactylon: is it the grass with an opposite phyllotaxy? Plant Morphol 25. (in press)

Iwamoto A, Kondo E, Fujihashi H, Sugiyama M（2013）Kinematic study of root elongation in Arabidopsis thaliana with a novel image-analysis program. J Plant Res 126, 187-192.

坂本　敦

Watanabe S, Kounosu Y, Shimada H, Sakamoto A (2014) Arabidopsis xanthine dehydrogenase mutants defective in purine degradation show a compromised protective response to drought and oxidative stress. Plant Biotechnol (in press)

Watanabe S, Matsumoto M, Hakomori Y, Takagi H, Shimada H, Sakamoto A (2014) The purine metabolite allantoin enhances abiotic stress tolerance through synergistic activation of abscisic acid metabolism. Plant Cell Environ doi: 10.1111/pce.12218.

下嶋　美恵

Shimojima M, Watanabe T, Madoka Y, Koizumi R, Yamamoto MP, Masuda K, Yamada K, Masuda S, Ohta H (2013) Differential regulation of two types of monogalactosyldiacylglycerol synthase in membrane lipid remodeling under phosphate-limited conditions in sesame plants. Front Plant Sci 4, 469. doi: 10.3389/fpls.2013.00469.

Yuzawa Y, Shimojima M, Sato R, Mizusawa N, Ikeda K, Suzuki M, Iwai M, Hori K, Wada H, Masuda S, Ohta H (2013) Cyanobacterial monogalactosyldiacylglycerol-synthesis pathway is involved in normal unsaturation of galactolipids and low-temperature adaptation of Synechocystis sp. PCC 6803. Biochim Biophys Acta doi: 10.1016/j.bbalip.2013.12.007.

白石　文秀

Iwata M, Sriyudthsak K, Hirai MY, Shiraishi F (2014) Estimation of kinetic parameters in an S-system equation model for a metabolic reaction system using the Newton-Raphson method. Math Biosci 248, 11-21.

Iwata M, Shiraishi F, Voit EO (2013) Coarse but efficient identification of metabolic pathway systems. Int J Systs Biol 4, 57-72.

関　原明

Kim JM, To TK, Tanaka M, Endo TA, Matsui A, Ishida J, Robertson FC, Toyoda T, Seki M (2013) Highly-reproducible ChIP-on-chip analysis to identify genome-wide protein binding and chromatin status in Arabidopsis. In "Methods in Molecular Biology- A third edition of the Arabidopsis Protocols (Edited by Drs. Jose J. Sanchez-Serrano and Julio Salinas)". Humana Press Inc, NJ. (in press)

Kim JM, To TK, Seki M (2012) An epigenetic integrator: New insights into genome regulation, environmental stress responses and developmental controls by HISTONE DEACETYLASE 6. Plant Cell Physiol 53, 794-800.

金　鍾明、遠藤高帆、石田順子、豊田哲郎、関　原明 (2011)「高速シーケンサーを用いたシロイヌナズナにおけるエピゲノム解析の実際」 植物の生長調節　46,142-148.

竹澤　大輔

Sakata Y, Komatsu K, Takezawa D. (2014) ABA as a universal plant hormone. Prog Bot 75, 58-96.

Bhyan SB, Minami A, Kaneko Y, Suzuki S, Arakawa K, Sakata Y, Takezawa D (2012) Cold acclimation in the moss Physcomitrella patens involves abscisic acid-dependent signaling. J Plant Physiol 169, 137-145.

太治　輝昭

Ariga H, Katori T, Yoshihara R, Hase Y, Nozawa S, Narumi I, Sakata Y, Hayashi T, Taji T (2013) Arabidopsis sos1 mutant in a salt-tolerant accession revealed an importance of salt acclimation ability in plant salt tolerance. Plant Sig Behav 8, 1-5

Higashi Y, Ohhama N, Ishikawa T, Shimura A, Katori T, Kusakabe K, Yamaguchi-Shinozaki K, Ishida J, Tanaka M, Seki M, Shinozaki K, Sakata Y, Hayashi T, Taji T (2013) Thellungiella salsuginea HsfA1d, a protein identified via FOX hunting, functions as a major positive regulator in heat stress response. Mol Plant 6, 411-422.

千葉　由佳子

Yamashita Y, Lambein I, Kobayashi S, Onouchi H, Chiba Y, Naito S (2013) A halt in poly(A) shortening during S-adenosyl-L-methionine-induced translation arrest in CGS1 mRNA of Arabidopsis thaliana. Genes Genet Syst 88, 241-249.

Chiba Y, Mineta K, Hirai YM, Suzuki Y, Kanaya S, Takahashi H, Onouchi H, Yamaguchi J, Naito S. (2013) Changes in mRNA stability associated with cold stress in Arabidopsis cells. Plant Cell Physiol 54, 180-194.

野口　航

福田　弘和

Higashi T, Kamitamari A, Okamura N, Ukai K, Okamura K, Tezuka T, Fukuda H (2014) Characterization of circadian rhythms through a bioluminescence reporter assay in Lactuca sativa L. Environ Control Biol (in press)

堀江　智明

Schroeder JI, Delhaize E, Frommer WB, Guerinot ML, Harrison MJ, Herrera-Estrella L, Horie T, Kochian LV, Munns R, Nishizawa NK, Tsay YF, Sanders D (2013) Using membrane transporters to improve crops for sustainable food production. Nature 497, 60-66.

Horie T, Karahara I, Katsuhara M (2012) Salinity tolerance mechanisms in glycophytes: An overview with the central focus on rice plants. Rice 5, 11.

Horie T, Brodsky DE, Costa A, Kaneko T, Schiavo FL, Katsuhara M, Schroeder JI (2011) K⁺ transport by the OsHKT2;4 transporter from rice with atypical Na⁺ transport properties and competition in permeation of K⁺ over Mg²⁺ and Ca²⁺ ions. Plant Physiol 156, 1493-1507.

本瀬　宏康

Takatani S, Ikeda T, Takahashi T, Motose H (2012) NIMA-related kinases regulate directional cell growth and organ development through microtubule function in Arabidopsis thaliana. Plant Sig Behav 7, 1552-1555.

Yoshimoto K, Noutoshi Y, Hayashi K, Shirasu K, Takahashi T, Motose H (2012) Thermospermine suppresses auxin-inducible xylem differentiation in Arabidopsis thaliana. Plant Sig Behav 7, 937-939.

Yoshimoto K, Noutoshi Y, Hayashi K, Shirasu K, Takahashi T, Motose H (2012) A chemical biology approach reveals an opposite action between thermospermine and auxin in xylem development in Arabidopsis thaliana. Plant Cell Physiol 53, 635-645.

Motose H, Hamada T, Yoshimoto K, Murata T, Hasebe M, Watanabe Y, Hashimoto T, Sakai T, Takahashi T (2011) NIMA-related kinases 6, 4, and 5 interact with each other to regulate microtubule organization during epidermal cell expansion in Arabidopsis thaliana. Plant J 67, 993-1005.

平成24年度以前の班員の研究業績

Chen Z, Fujii Y, Yamaji N, Masuda S, Takemoto Y, Kamiya T, Yusuyin Y, Iwasaki K, Kato S, Maeshima M, Ma JF, Ueno D (2013) Mn tolerance in rice is mediated by OsMTP8.1, a member of the cation diffusion facilitator family. J Exp Bot 64, 4375-4387.

Fukao Y, Yoshida M, Kurata R, Kobayashi M, Nakanishi M, Fujiwara M, Nakajima K Ferjani A (2013) Peptide separation methodologies for in-depth proteomics in Arabidopsis. Plant Cell Physiol 54, 808-815.

Kato M, Aoyama T, Maeshima M (2013) The Ca²⁺-binding protein PCaP2 located on the plasma membrane is involved in root hair development as a possible signal transducer. Plant J 74, 690-700.

Koshiba T, Kobayashi M, Matsuoka K, Fujiwara T, Matoh T (2013) Boron nutrition of cultured tobacco BY-2 cells. VII. Rapid induction of metabolic dysfunction in cells deprived of boron as revealed by microarray analysis. Soil Sci Plant Nutr 59, 189-194.

Miyawaki K, Tabata R, Sawa S (2013) Evolutionarily conserved CLE peptide signaling in plant development, symbiosis, and parasitism. Curr Opin Plant Biol 16, 598-606.

Oiwa T, Kitayama K, Kobayashi M, Matoh T (2013) Boron deprivation immediately causes cell death in growing roots of Arabidopsis thaliana (L.) Heynh. Soil Sci Plant Nutr 59, 621-627.

Tabata R, Kamiya, T, Shigenobu S, Yamaguchi K, Yamada, M, Hasebe M, Fujiwara T, Sawa S (2013) Identification of an EMS-induced causal mutation in a gene required for boron-mediated root development by low-coverage genome re-sequencing in Arabidopsis. Plant Sig Behav e22534.

Tamaki T, Betsuyaku S, Hamasaki R, Fujiwara M, Fukao Y, Fukuda H, Sawa S (2013) CLE19 peptide activity is regulated by SUPPRESSOR OF LLP1 1-mediated C-terminal processing in endosomes in Arabidopsis. Plant J (in press)

山田雄介、梅原三貴久、瀬戸義哉（2013）ストリゴラクトンの多様な生理作用と生合成. 植物の生長調節　48, 148-153.

Ejima C, Kobayashi Y, Honda H, Shimizu N, Kiyohara S, Hamasaki R, Sawa S (2011) A Phalaenopsis variety with floral organs showing C class homeotic transformation and its revertant may enable Phalaenopsis as a potential molecular genetic material. Gene Genet Sys 86, 93-95.

Kiyohara S, Honda H, Shimizu N, Ejima C, Hamasaki R, Sawa S (2011) Tryptophan auxotroph mutants suppress the superroot2 phenotypes, modulating IAA biosynthesis in Arabidopsis. Plant Sig Behav 6, 1351-1355.

Kobayashi M, Kouzu N, Inami A, Toyooka K, Konishi Y, Matsuoka K, Matoh T (2011) Characterization of Arabidopsis CTP:3-deoxy-d-manno-2-octulosonate cytidylyltransferase (CMP-KDO synthetase), the enzyme that activates KDO during rhamnogalacturonan II biosynthesis. Plant Cell Physiol 52, 1832-1843.

Umehara M (2011) Strigolactone, a key regulator of nutrient allocation in plants. Plant Biotechnol 28, 429-437.

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