"snipSNP" is the package of perl scripts to identify EMS-induced causal mutation.

It includes three perl scripts as bellow. removes background SNPs. extracts SNPs within annotated genes. counts numbers of SNPs within intervals.

For more detail, see readme.txt in downloded file.


Related papers

Uchida N, Sakamoto T, Kurata T, Tasaka M. (2011)
Identification of EMS-induced causal mutations in a non-reference Arabidopsis thaliana accession by whole genome sequencing.
Plant Cell Physiol. 52(4):716-22


Tomoaki Sakamoto:
Tetsuya Kurata: