"snipSNP" is the package of perl scripts to identify EMS-induced causal mutation.
It includes three perl scripts as bellow.
extractSNP.pl: removes background SNPs.
snpinGFF.pl: extracts SNPs within annotated genes.
stateSNP.pl: counts numbers of SNPs within intervals.
For more detail, see readme.txt in downloded file.
Uchida N, Sakamoto T, Kurata T, Tasaka M. (2011)
Identification of EMS-induced causal mutations in a non-reference Arabidopsis thaliana accession by whole genome sequencing.
Plant Cell Physiol. 52(4):716-22
Tomoaki Sakamoto: firstname.lastname@example.org
Tetsuya Kurata: email@example.com