植物代謝制御(出村研究室)

English

発表論文

2018

  1. Tanaka, H., Suzuki, Y., Yamasaki, S., Yoshino, K., Kato, K. and Nakamura, S. (2018) R-STEINER: Generation Method of 5'UTR for Increasing the Amount of Translated Proteins. IPSJ Trans. Bioinform. 11: 14-23. doi: https://doi.org/10.2197/ipsjtbio.11.14 [WebPage]
  2. Ueno, D., Yamasaki, S., Demura, T. and Kato, K. (2018) Comprehensive analysis of mRNA internal cleavage sites in Arabidopsis thaliana. J. Biosci. Bioeng. 125: 723-728. doi: 10.1016/j.jbiosc.2017.12.022 [PubMed]
  3. Yamasaki, S., Sanada, Y., Imase, R., Matsuura, H., Ueno, D., Demura, T. and Kato, K. (2018) Arabidopsis thaliana cold-regulated 47 gene 5-untranslated region enables stable high-level expression of transgenes. J. Biosci. Bioeng. 125: 124-130. doi: 10.1016/j.jbiosc.2017.08.007 [PubMed]
  4. 秋吉 信宏、出村 拓、大谷 美沙都 (2018) "植物の通道細胞進化を転写因子から読み解く" 化学と生物 56: 353-363 [WebPage]
  5. Kawabe, H., Ohtani, M., Kurata, T., Sakamoto, T. and Demura, T. (2018) Protein S-nitrosylation regulates xylem vessel cell differentiation in Arabidopsis. Plant Cell Physiol. 59: 17-29. doi: 10.1093/pcp/pcx151 [PubMed]
  6. Tan, T.T., Endo, H., Sano, R., Kurata, T., Yamaguchi, M., Ohtani, M. and Demura, T. (2018) Transcription factors VND1-VND3 contribute to cotyledon xylem vessel formation Plant Physiol. 176: 773-789. doi: 10.1104/pp.17.00461 [PubMed]
  7. Ohtani, M. (2018) Plant snRNP biogenesis: a perspective from the nucleolus and Cajal bodies. Front. Plant Sci. 8: 2184. doi: 10.3389/fpls.2017.02184 [PubMed]
  8. Noguchi, M., Fujiwara, M., Sano, R., Nakano, Y., Fukao, Y., Ohtani, M. and Demura, T. (2018) Proteomic analysis of xylem vessel cell differentiation in VND7-inducible tobacco BY-2 cells by two-dimensional gel electrophoresis. Plant Biotechnol. 35: 31-37. doi: https://doi.org/10.5511/plantbiotechnology.18.0129a [WebPage]
  9. Ohtani, M., Kawabe, H. and Demura, T. (2018) Evidence that thiol-based redox state is critical for xylem vessel cell differentiation. Plant Signal. Behav. 13: e1428512. doi: 10.1080/15592324.2018.1428512 [PubMed]

2017

  1. Ohtani, M., Akiyoshi, N., Takenaka, Y., Sano, R. and Demura, T. (2017) Evolution of plant conducting cells: perspectives from key regulators of vascular cell differentiation. J. Exp. Bot. 68: 17-26. doi: 10.1093/jxb/erw473 [PubMed]
  2. 加藤 晃、山崎 将太朗 (2017) "植物でのタンパク質の高効率翻訳を可能にする数理モデル" バイオサイエンスとインダストリー 75: 240-241
  3. Ohtani, M., Nakano, Y., Sano, R., Kurata, T. and Demura, T. (2017) Toxic Substances in Jatropha Seeds: Biosynthesis of the Most Problematic Compounds, Phorbol Esters. The Jatropha Genome. Chapter 6: 97-111. doi: 10.1007/978-3-319-49653-5 [WebPage]
  4. Ohtani, M. (2017) Transcriptional regulation of snRNAs and its significance for plant development. J. Plant Res. 130: 57-66. doi: 10.1007/s10265-016-0883-3 [PubMed]
  5. Ohtani, M. (2017) Expanding the plant non-coding RNA world. J. Plant Res. 130: 3-5. doi: 10.1007/s10265-016-0896-y [PubMed]
  6. Sawano, H., Matsuzaki, T., Usui, T., Tabara, M., Fukudome, A., Kanaya, A., Tanoue, D., Hiraguri, A., Horiguchi, G., Ohtani, M., Demura, T., Kozaki, T., Ishii, K., Moriyama, H. and Fukuhara, T. (2017) Double-stranded RNA-binding protein DRB3 negatively regulates anthocyanin biosynthesis by modulating PAP1 expression in Arabidopsis thaliana. J. Plant Res. 130: 45-55. doi: 10.1007/s10265-016-0886-0 [PubMed]
  7. Yu, X., Ohtani, M., Kusano, M., Nishikubo, N., Uenoyama, M., Umezawa, T., Saito, K., Shinozaki, K. and Demura, T. (2017) Enhancement of Abiotic Stress Tolerance in Poplar by Overexpression of Key Arabidopsis Stress Response Genes, AtSRK2C and AtGolS2. Mol. Breed. 37: 57. doi: https://doi.org/10.1007/s11032-016-0618-0 [WebPage]
  8. Yu, X., Takebayashi, A., Demura, T. and Ohtani, M. (2017) Differential expression of poplar sucrose nonfermenting1-related protein kinase 2 genes in response to abiotic stress and abscisic acid. J. Plant Res. 130: 929-940. doi: 10.1007/s10265-017-0952-2 [PubMed]
  9. 出村拓、大谷美沙都 (2017) "構造材料としての木質高分子の生合成メカニズムの理解" 高分子 66: 281-283
  10. 大谷 美沙都 (2017) "植物の器官再生におけるRNA代謝制御の役割" 生物科学 68: 240-249
  11. Yamaguchi, Y.L., Suzuki, R., Cabrera, J., Nakagami, S., Sagara, T., Ejima, C., Sano, R., Aoki, Y., Olmo, R., Kurata, T., Obayashi, T., Demura, T., Ishida, T., Escobar, C. and Sawa, S. (2017) Root-Knot and Cyst Nematodes Activate Procambium-Associated Genes in Arabidopsis Roots. Front. Plant Sci. 8: 1195. doi: 10.3389/fpls.2017.01195 [PubMed]
  12. Takagi, D., Amako, K., Hashiguchi, M., Fukaki, H., Ishizaki, K., Tatsuaki, G., Fukao, Y., Sano, R., Kurata, T., Demura, T., Sawa, S. and Miyake, C. (2017) Chloroplastic ATP synthase builds up a proton motive force preventing production of reactive oxygen species in photosystem I. Plant J. 91: 306-324. doi: 10.1111/tpj.13566 [PubMed]
  13. 大谷美沙都 (2017) "pre-mRNA スプライシングが制御する植物の発生・環境応答・器官再生" BSJ-Review. 8: 80-98. doi: 10.24480/bsj-review.8b6.00116 [WebPage]
  14. Bowman, J.L., Kohchi, T., Yamato, K.T., Jenkins, J., Shu, S., Ishizaki, K., Yamaoka, S., Nishihama, R., Nakamura, Y., Berger, F., Adam, C., Aki, S.S., Althoff, F., Araki, T., Arteaga-Vazquez, M.A., Balasubrmanian, S., Barry, K., Bauer, D., Boehm, C.R., Briginshaw, L., Caballero-Perez, J., Catarino, B., Chen, F., Chiyoda, S., Chovatia, M., Davies, K.M., Delmans, M., Demura, T., Dierschke, T., Dolan, L., Dorantes-Acosta, A.E., Eklund, D.M., Florent, S.N., Flores-Sandoval, E., Fujiyama, A., Fukuzawa, H., Galik, B., Grimanelli, D., Grimwood, J., Grossniklaus, U., Hamada, T., Haseloff, J., Hetherington, A.J., Higo, A., Hirakawa, Y., Hundley, H.N., Ikeda, Y., Inoue, K., Inoue, S.I., Ishida, S., Jia, Q., Kakita, M., Kanazawa, T., Kawai, Y., Kawashima, T., Kennedy, M., Kinose, K., Kinoshita, T., Kohara, Y., Koide, E., Komatsu, K., Kopischke, S., Kubo, M., Kyozuka, J., Lagercrantz, U., Lin, S.S., Lindquist, E., Lipzen, A.M., Lu, C.W., De Luna, E., Martienssen, R.A., Minamino, N., Mizutani, M., Mizutani, M., Mochizuki, N., Monte, I., Mosher, R., Nagasaki, H., Nakagami, H., Naramoto, S., Nishitani, K., Ohtani, M., Okamoto, T., Okumura, M., Phillips, J., Pollak, B., Reinders, A., Rövekamp, M., Sano, R., Sawa, S., Schmid, M.W., Shirakawa, M., Solano, R., Spunde, A., Suetsugu, N., Sugano, S., Sugiyama, A., Sun, R., Suzuki, Y., Takenaka, M., Takezawa, D., Tomogane, H., Tsuzuki, M., Ueda, T., Umeda, M., Ward, J.M., Watanabe, Y., Yazaki, K., Yokoyama, R., Yoshitake, Y., Yotsui, I., Zachgo, S. and Schmutz, J. (2017) Insights into land plant evolution garnered from the Marchantia polymorpha genome. Cell. 171: 287-304. doi: 10.1016/j.cell.2017.09.030 [PubMed]
  15. Ishii, T., Matsuoka, K., Ono, H., Ohnishi-Kameyama, M., Yaoi, K., Nakano, Y., Ohtani, M., Demura, T., Iwai, H. and Satoh, S. (2017) Characterization of xylan in the early stages of secondary cell wall formation
    in tobacco bright yellow-2 cells. Carbohydr. Polym. 176: 381-391. doi: 10.1016/j.carbpol.2017.08.108 [PubMed]
  16. Ohtani, M., Ramachandran, V., Tokumoto, T., Takebayashi, A., Ihara, A., Matsumoto, T., Hiroyama, R., Nishikubo, N. and Demura, T. (2017) Identification of novel factors that increase enzymatic saccharification efficiency in Arabidopsis wood cells. Plant Biotechnol. 34: 203-206. doi: https://doi.org/10.5511/plantbiotechnology.17.1107a [WebPage]

2016

  1. Ohtani, M., Morisaki, K., Sawada, Y., Sano, R., Uy, A.L., Yamamoto, A. Kurata, T., Nakano, Y., Suzuki, S., Matsuda, M., Hasunuma, T., Hirai, M.Y. and Demura, T. (2016) Primary Metabolism during Biosynthesis of Secondary Wall Polymers of Protoxylem Vessel Elements. Plant Physiol. 172: 1612-1624. doi: 10.1104/pp.16.01230 [PubMed]
  2. Endo, S., Yoshitake, H., Tsukamoto, H., Matsuura, H., Kato, K., Sakuraba, M., Takamori, K., Fujiwara, H., Takeda, S. and Araki, Y (2016) TEX101, a glycoprotein essential for sperm fertility, is required for stable expression of Ly6k on testicular germ cells. Sci. Rep. 6: 23616. doi: 10.1038/srep23616 [PubMed]
  3. Hotta, T., Fujita, S., Uchimura, S., Noguchi, M., Demura, T., Muto, E. and Hashimoto, T. (2016) Affinity Purification and Characterization of Functional Tubulin from Cell Suspension Cultures of Arabidopsis and Tobacco. Plant Physiol. 170: 1189-1205. doi: 10.1104/pp.15.01173 [PubMed]
  4. Song, X., Yu, X., Hori, C., Demura, T., Ohtani, M. and Zhuge, Q. (2016) Heterologous overexpression of poplar SnRK2 genes enhanced salt stress tolerance in Arabidopsis thaliana. Front. Plant Sci. 7: 612. doi: 10.3389/fpls.2016.00612 [PubMed]
  5. Li, Z., Omranian, N., Neumetzler, L., Wang, T., Herter, T., Usadel, B., Demura, T., Giavalisco, P., Nikoloski, Z. and Persson, S. (2016) A Transcriptional and Metabolic Framework for Secondary Wall Formation in Arabidopsis. Plant Physiol. 172: 1334-1351 doi: 10.1104/pp.16.01100 [PubMed]
  6. Okubo-Kurihara, E., Ohtani, M., Kurihara, Y., Kakegawa, K., Kobayashi, M., Nagata, N., Komatsu, T., Kikuchi, J., Cutler, S., Demura, T. and Matsui, M. (2016) Modification of plant cell wall structure accompanied by enhancement of saccharification efficiency using a chemical, lasalocid sodium. Sci. Rep. 6: 34602. doi: 10.1038/srep34602 [PubMed]
  7. Fang, L., Ishikawa, T., Rennie, E.A., Murawska, G.M., Lao, J., Yan, J., Tsai, A.Y., Baidoo, E.E., Xu, J., Keasling, J.D., Demura, T., Kawai-Yamada, M., Scheller, H.V. and Mortimer, J.C. (2016) Loss of inositol phosphorylceramide sphingolipid mannosylation induces plant immune responses and reduces cellulose content in Arabidopsis. Plant Cell. 28: 2991-3004. doi: 10.1105/tpc.16.00186 [PubMed]

2015

  1. Yamasaki, S., Matsuura, H., Demura, T. and Kato, K. (2015) Changes in polysome association of mRNA throughout growth and development in Arabidopsis thaliana. Plant Cell Physiol. 56: 2169-2180. doi: 10.1093/pcp/pcv133 [PubMed]
  2. Rejab, N.A., Nakano, Y., Yoneda, A., Ohtani, M. and Demura, T. (2015) Possible contribution of TED6 and TED7, secondary cell wall-related membrane proteins, to evolution of tracheary element in angiosperm lineage. Plant Biotechnol. 32: 343-347. doi: http://doi.org/10.5511/plantbiotechnology.15.0826a [WebPage]
  3. Kobayashi, K., Suzuki, T., Iwata, E., Nakamichi, N., Suzuki, T., Chen, P., Ohtani, M., Ishida, T., Hosoya, H., Müller, S., Leviczky, T., Pettkó-Szandtner, A., Darula, Z., Iwamoto, A., Nomoto, M., Tada, Y., Higashiyama, T., Demura, T., Doonan, J.H., Hauser, M.T., Sugimoto, K., Umeda, M., Magyar, Z., Bögre, L. and Ito, M. (2015) Transcriptional repression by MYB3R proteins regulates plant organ growth. EMBO J. 34: 1192-2007. doi: 10.15252/embj.201490899 [PubMed]
  4. Nakano, Y., Yamaguchi, M., Endo, H., Rejab, N.A. and Ohtani, M. (2015) NAC-MYB-based transcriptional regulation of secondary cell wall biosynthesis in land plants. Front. Plant Sci. 6:288. doi: 10.3389/fpls.2015.00288 [PubMed]
  5. 出村 拓、大谷 美沙都 (2015) "セミナー室「植物細胞壁」植物細胞壁:細胞壁形成の設計図~転写制御機構~" 化学と生物 53:313-318 [WebPage]
  6. 大谷 美沙都、出村 拓 (2015) "セルロース系バイオマスの生産に向けたGM早生樹木の研究開発" 「セルロースナノファイバーの調製、分散・複合化と製品応用」株式会社技術情報協会出版 [WebPage]
  7. 大谷 美沙都 (2015) "理研バイオリソース" 「植物細胞壁解析プロトコール」弘前大学出版会
  8. Ohtani, M., Takebayashi, A., Hiroyama, R., Xu, B., Kudo, T., Sakakibara, H., Sugiyama, M. and Demura, T. (2015) Cell dedifferentiation and organogenesis in vitro require more snRNA than does seedling development in Arabidopsis thaliana. J. Plant Res. 128: 371-380. doi: 10.1007/s10265-015-0704-0 [PubMed]
  9. Ohtani, M. (2015) Regulation of RNA metabolism is important for in vitro dedifferentiation of plant cells. J. Plant Res. 128:361-369. doi: 10.1007/s10265-015-0700-4 [PubMed]
  10. Yamaguchi, M., Nagahage, I.S.P., Ohtani, M., Ishikawa, T., Uchimiya, H., Kawai-Yamada, M. and Demura, T. (2015) Arabidopsis NAC domain proteins VND-INTERACTING1 and ANAC103 interact with multiple NAC domain proteins. Plant Biotechnol. 32: 1-5. doi: 10.5511/plantbiotechnology.15.0208a [WebPage]
  11. Endo, H., Yamaguchi, M., Tamura, T., Nakano, Y., Nishikubo, N., Yoneda, A., Kato, K., Kubo, M., Kajita, S., Katayama, Y., Ohtani, M. and Demura, T. (2015) Multiple Classes of Transcription Factors Regulate the Expression of VASCULAR-RELATED NAC-DOMAIN7, a Master Switch of Xylem Vessel Differentiation. Plant Cell Physiol. 56: 242-254. doi: 10.1093/pcp/pcu134 [PubMed]
  12. Limkul, J., Misaki, R., Kato, K. and Fujiyama, K. (2015) The Combination of Plant Translational Enhancers and Terminator Increase the Expression of Human Glucocerebrosidase in Nicotiana benthamiana plants. Plant Sci. 240: 41-49. doi: 10.1016/j.plantsci.2015.08.018 [PubMed]
  13. Matsui, T., Sawada, K., Takita, E. and Kato, K. (2015) Compatibility of translational enhancers with various plant species. Plant Biotech. 32: 309-316. doi: https://doi.org/10.5511/plantbiotechnology.15.1103a [WebPage]
  14. Mori, T., Tsuboi, Y., Ishida, N., Nishikubo, N., Demura, T. and Kikuchi, J. (2015) Multidimensional High-Resolution Magic Angle Spinning and Solution-State NMR Characterization of 13C-labeled Plant Metabolites and Lignocellulose. Sci. Rep. 5: 11848. doi: 10.1038/srep11848 [PubMed]
  15. 大谷 美沙都、出村 拓 (2015) "NAC転写因子VNSファミリーが語る陸上植物の通水細胞進化の物語" BSJ-Review. 7: 87-96. doi: 10.24480/bsj-review.7b5.00084 [WebPage]
  16. Song, X., Ohtani, M., Hori, C., Takebayasi, A., Hiroyama, R., Rejab, N.A., Suzuki, T., Demura, T., Yin, T., Yu, X. and Zhuge, Q. (2015) Physical interaction between SnRK2 and PP2C is conserved in Populus trichocarpa. Plant Biotechno. 32: 337-341. doi: https://doi.org/10.5511/plantbiotechnology.15.0813b [WebPage]
  17. Watanabe, Y., Meents, M.J., McDonnell, L.M., Barkwill, S., Sampathkumar, A., Cartwright, H.N., Demura, T., Ehrhardt, D.W., Samuels, A.L. and Mansfield, S.D. (2015) Visualization of cellulose synthases in Arabidopsis secondary cell walls. Science. 350: 198-203. doi: 10.1126/science.aac7446 [PubMed]

2014

  1. 山崎 将太朗、加藤 晃 (2014) "植物への有用遺伝子導入(安定高発現を目指して)" 生物工学会誌 92: 617-621 [WebPage]
  2. Xu, B., Ohtani, M., Yamaguchi, M., Toyooka, K., Wakazaki, M., Sato, M., Kubo, M., Nakano, Y., Sano, R., Hiwatashi, Y., Murata, T., Kurata, T., Yoneda, A., Kato, K., Hasebe, M. and Demura, T. (2014) Contribution of NAC transcription factors to plant adaptation to land. Science 343: 1505-1508. doi: 10.1126/science.1248417 [PubMed]
  3. Ueda, K., Okawara, R., Yamasaki, S., Sanada, Y., Kinoshita, E., Yoneda, A., Demura, T. and Kato, K. (2014) Efficient transgene expression by alleviation of translational repression in plant cells. J. Biosci. Bioeng. 118: 434-440. doi: 10.1016/j.jbiosc.2014.03.007 [PubMed]
  4. Matsui, T., Sawada, K., Takita, E. and Kato, K. (2014) The longer version of Arabidopsis thaliana heat shock protein 18.2 gene terminator contributes to higher expression of stably integrated transgenes in cultured tobacco cells. Plant Biotechnol. 31: 191-194. doi: https://doi.org/10.5511/plantbiotechnology.14.0117b [WebPage]
  5. Sasaki, K., Kato, K., Mishima, H., Furuichi, M., Waga, I., Takane, K., Yamaguchi, H. and Ohtsubo, N. (2014) Generation of fluorescent flowers exhibiting strong fluorescence by combination of fluorescent protein from marine plankton and recent genetic tools in Torenia fournieri Lind. Plant Biotechnol. 31: 309-318. doi: 10.5511/plantbiotechnology.14.0907a [WebPage]
  6. Zhou, J., Wang, J., Bi, Y., Wang, L., Tang, L., Yu, X., Ohtani, M., Demura, T. and Zhuge, Q. (2014) Overexpression of PtSOS2 enhances salt tolerance in transgenic poplars. Plant Mol. Biol. Report. 32: 185-197. doi: 10.1007/s11105-013-0640-x [PubMed]
  7. Zhou, J., Yang, Y., Yu, J., Wang, L., Yu, X., Ohtani, M., Kusano, M., Saito, K., Demura, T. and Zhuge, Q. (2014) Responses of Populus trichocarpa galactinol synthase genes to abiotic stresses. J. Plant Res. 127: 347-358. doi: 10.1007/s10265-013-0597-8 [PubMed]
  8. Numata, K., Yoshizumi, T., Ohtani, M., Demura, T. and Kodama, Y. (2014) Local gene silencing in plants via synthetic dsRNA and carrier peptide. Plant Biotechnol. J. 12: 1027-1034. doi: 10.1111/pbi.12208 [PubMed]
  9. Schuetz, M., Benske, A., Smith, R.E., Watanabe, Y., Tobimatsu, Y., Ralph, J., Demura, T., Ellis, B. and Samuels, A.L. (2014) Laccases direct lignification in the discrete secondary cell wall domains of protoxylem. Plant Physiol. 166: 798-807. doi: 10.1104/pp.114.245597 [PubMed]

2013

  1. 山崎 将太朗, 上田 清貴, 加藤 晃 (2013) "環境ストレスの影響を考慮した植物発現ベクターの開発" 生物工学会誌 91: 356-360 [WebPage]
  2. Matsuura, H., Takenami, S., Kubo, Y., Ueda, K., Ueda, A., Yamaguchi, M., Hirata, K., Demura, T., Kanaya, S. and Kato, K. (2013) A computational and experimental approach reveals that the 5'-proximal region of the 5'-UTR has a Cis-regulatory signature responsible for heat stress-regulated mRNA translation in Arabidopsis. Plant Cell Physiol. 54: 474-483. doi: 10.1093/pcp/pcs189 [PubMed]
  3. Nakano, Y., Nishikubo, N., Sato-Izawa, K., Mase, K., Kitano, K., Kajita, S., Demura, T. and Katayama, Y. (2013) Transcription profiling identifies candidate genes for secondary cell wall formation and hydroxycinnamoylarabinoxylan biosynthesis in the rice internode. Plant Biotechnol. 30: 433-446. doi: https://doi.org/10.5511/plantbiotechnology.13.0620a [WebPage]
  4. Liu, W., Zhang, W., Du, M., Sha, Y., Yu, X., Ohtani, M., Demura, T. and Zhuge, Q. (2013) Diurnal and circadian expression of clock-associated pseudo-response regulators in Populus trichocarpa. Plant Biotechnol. 30: 517-521 doi: https://doi.org/10.5511/plantbiotechnology.13.0905a [WebPage]

2012

  1. Ueda, K., Matsuura, H., Yamaguchi, M., Demura, T. and Kato, K. (2012) Genome-wide analyses of changes in translation state caused by elevated temperature in Oryza sativa. Plant Cell Physiol. 53: 1481-1491. doi: 10.1093/pcp/pcs092 [PubMed]
  2. Matsui, T., Matsuura, H., Sawada, K., Takita, E., Kinjo, S., Takenami, S., Ueda, K., Nishigaki, N., Yamasaki, S., Hata, K., Yamaguchi, M., Demura, T. and Kato, K. (2012) High level expression of transgenes by use of 5′-untranslated region of the Arabidopsis thaliana arabinogalactan-protein 21 gene in dicotyledons. Plant Biotech. 29: 319-322. doi: https://doi.org/10.5511/plantbiotechnology.12.0322a [WebPage]
  3. 上田 清貴、加藤 晃 (2012) "植物におけるタンパク質翻訳の効率化" バイオ医薬品製造の効率化と生産基材の開発 シーエムシー出版 125-130 [WebPage]
  4. 松浦 秀幸,加藤 晃,平田 收正 (2012) "植物の環境ストレス応答と翻訳レベルの遺伝子発現制御" 生産と技術 64: 90-93 [WebPage]

2011

  1. Matsui, T., Takita, E., Sato, T., Aizawa, M., Ki, M., Kadoyama, Y., Hirano, K., Kinjo, S., Asao, H., Kawamoto, K., Kariya, H., Makino, S., Hamabata, T., Sawada, K. and Kato, K. (2011) Production of double repeated B subunit of Shiga toxin 2e at high levels in transgenic lettuce plants as vaccine material for porcine edema disease. Transgenic Res. 20: 735-748. doi: 10.1007/s11248-010-9455-9 [PubMed]
  2. Ohtani, M., Nishikubo, N., Xu, B., Yamaguchi, M., Mitsuda, N., Goue, N., Shi, F., Ohme-Takagi, M. and Demura, T. (2011) A NAC domain protein family contributing to regulation of wood formation in poplar. Plant J. 67: 499-512. doi: 10.1111/j.1365-313X.2011.04614.x [PubMed]
  3. Yamaguchi, M., Mitsuda, N., Ohtani, M., Ohme-Takagi, M., Kato, K. and Demura, T. (2011) VASCULAR-RELATED NAC-DOMAIN7 directly regulates expression of a broad range of genes for xylem vessel formation. Plant J. 66: 579-590. doi: 10.1111/j.1365-313X.2011.04514.x [PubMed]
  4. Matsui, T., Takita, E., Sato, T., Kinjo, S., Aizawa, M., Sugiura, Y., Hamabata, T., Sawada, K. and Kato, K. (2011) N-Glycosylation at non-canonical Asn-X-Cys sequences in plant cells. Glycobiology. 21: 994-999. doi: 10.1093/glycob/cwq198 [PubMed]

2010

  1. Matsuura, H., Kiyotaka, U., Ishibashi, Y., Kubo, Y., Yamaguchi, M., Hirata, K., Demura, T. and Kato, K. (2010) A short period of mannitol stress but not LiCl stress led to global translational repression in plants. Biosci. Biotechnol. Biochem. 74:2110-2112. doi: 10.1271/bbb.100330 [PubMed]
  2. Yamaguchi, M., Goue, N., Igarashi, H., Ohtani, M., Nakano, Y., Mortimer, J.C., Nishikubo, N., Kubo, M., Katayama, Y., Kakegawa, K., Dupree, P. and Demura, T. (2010) VNSCULAR-RELATED NAC-DOMAIN6 (VND6) and VND7 effectively induce transdifferentiation into xylem vessel elements under control of an induction system. Plant Physiol. 153: 915-924. doi: 10.1104/pp.110.154013 [PubMed]
  3. Yamaguchi, M. and Demura, T. (2010) Transcriptional regulation of secondary wall formation controlled by NAC domain proteins. Plant Biotech. 27: 237-242. doi: https://doi.org/10.5511/plantbiotechnology.27.237 [WebPage]
  4. Nakano, Y., Nishikubo, N., Goue, N., Ohtani, M., Yamaguchi, M., Katayama, Y. and Demura, T. (2010) MYB transcription factors orchestrating the developmental program of xylem vessels in Arabidopsis roots. Plant Biotech. 27: 267-272. doi: https://doi.org/10.5511/plantbiotechnology.27.267 [WebPage]
  5. Yamaguchi, M., Ohtani, M., Mitsuda, N., Kubo, M., Ohme-Takagi, M., Fukuda, H. and Demura, T. (2010) VND-INTERACTING2, a NAC domain transcription factor, negatively regulates xylem vessel formation in Arabidopsis. Plant Cell. 22: 1249-1263. doi: 10.1105/tpc.108.064048 [PubMed]
  6. Demura, T. and Ye, Z.H. (2010) Regulation of plant biomass production. Curr. Opin. Plant Biol. 13: 299-304. doi: 10.1016/j.pbi.2010.03.002 [PubMed]
  7. Sugio, T., Matsuura, H., Matsui, T., Matsunaga, M., Nosho, T., Kanaya, S., Shinmyo, A. and Kato, K. (2010) Effect of the Sequence Context of the AUG Initiation Codon on the Rate of Translation in Dicotyledonous and Monocotyledonous Plant Cells. J. Biosci. Bioeng. 109: 170-173. doi: 10.1016/j.jbiosc.2009.07.009 [PubMed]
  8. Nagaya, S., Kawamura, K., Shinmyo, A. and Kato, K. (2010) The HSP terminator of Arabidopsis thaliana increases gene expression in plant cells. Plant Cell physiol. 51: 328-332. doi: 10.1093/pcp/pcp188 [PubMed]
  9. Matsuura, H., Ishibashi, Y., Shinmyo, A., Kanaya, S. and Kato, K (2010) Genome-wide analyses of early translational responses to elevated temperature and high salinity in Arabidopsis thaliana. Plant Cell physiol. 51:448-462. doi: 10.1093/pcp/pcq010 [PubMed]
  10. Shinmyo, A. and Kato, K. (2010) Molecular Farming: Production of Drugs and Vaccines in Higher Plants. J. Antibiot. (Tokyo). 63: 431-433. doi: 10.1038/ja.2010.63 [PubMed]

2009

  1. Endo, S., Pesquet, E., Yamaguchi, M., Tashiro, G., Sato, M., Toyooka, K., Nishikubo, N., Udagawa-Motose, M., Kubo, M., Fukuda, H. and Demura, T. (2009) Identifying new components participating in the secondary cell wall formation of vessel elements in Zinnia and Arabidopsis. Plant Cell. 21: 1155-1165. doi: 10.1105/tpc.108.059154 [PubMed]
  2. 出村 拓 (2009) "転写因子による植物バイオマス生産の制御" 蛋白質核酸酵素 54: 259-266 [WebPage]
  3. Matsui, T., Asao, H., Ki, M., Sawada, K. and Kato, K. (2009) Transgenic lettuce producing a candidate protein for vaccine against edema disease. Biosci. Biotechnol. Biochem. 73: 1628-1634 doi: 10.1271/bbb.90129 [PubMed]

2008

  1. Yamaguchi, M., Kubo, M., Fukuda, H. and Demura, T. (2008) Vascular-related NAC-DOMAIN7 is involved in the differentiation of all types of xylem vessels in Arabidopsis roots and shoots. Plant J. 55: 652-664. doi: 10.1111/j.1365-313X.2008.03533.x [PubMed]
  2. Endo, S., Pesquet, E., Tashiro, G., Kuriyama, H., Goffner, D., Fukuda, H. and Demura, T. (2008) Transient transformation and RNA silencing in Zinnia tracheary element differentiating cell cultures. Plant J. 53: 864-875. doi: 10.1111/j.1365-313X.2007.03377.x [PubMed]
  3. Ichikawa, K., Miyake, C., Iwano, M., Sekine, M., Shinmyo, A. and Kato, K. (2008) Ribulose 1,5-Bisphosphate Carboxylase/Oxygenase Large Subunit Translation is Regulated in a Small Subunit-Independent Manner in the Expanded Leaves of Tobacco. Plant Cell physiol. 49: 214-225. doi: 10.1093/pcp/pcm179 [PubMed]
  4. Sugio, T., Satoh, J., Matsuura, H., Shinmyo, A. and Kato, K. (2008) The 5'-Untranslated Region of the Oryza sativa Alcohol Dehydrogenase Gene Functions as a Translational Enhancer in Monocotyledonous Plant Cells. J. Biosci. Bioeng. 105: 300-302. doi: 10.1263/jbb.105.300 [PubMed]
  5. Matsuura, H., Shinmyo, A. and Kato, K. (2008) Preferential translation mediated by Hsp81-3 5'-UTR during heat shock involves ribosome entry at the 5'-end rather than an internal site in Arabidopsis suspension cells. J. Biosci. Bioeng. 105: 39-47. doi: 10.1263/jbb.105.39 [PubMed]

2007

  1. Demura, T. and Fukuda, H. (2007) Transcriptional regulation in wood formation. Trends Plant Sci. 12: 64-70. doi: 10.1016/j.tplants.2006.12.006 [PubMed]
  2. Kodama, Y., Nagaya, S., Shinmyo, A. and Kato, K. (2007) Mapping and characterization of DNase I hypersensitive sites in Arabidopsis chromatin. Plant Cell physiol. 48: 459-470. doi: 10.1093/pcp/pcm017 [PubMed]
  3. Kato, K., Marui, T., Kasai, S. and Shinmyo, A. (2007) Artificial control of transgene expression in Chlamydomonas reinhardtii chloroplast using the lac regulation system from Escherichia coli. J. Biosci. Bioeng. 104: 207-213. doi: 10.1263/jbb.104.207 [PubMed]
  4. Kodama, Y., Nagaya, S., Shinmyo, A. and Kato, K. (2007) Distinct DNase I hypersensitive sites are absent from promoters of transcriptionally incompetent genes in Arabidopsis. Plant Biotech. 24: 383-392. doi: https://doi.org/10.5511/plantbiotechnology.24.383 [WebPage]

2006

  1. 出村 拓 (2006) "草の茎を幹にかえる─木質形成のメカニズムとバイオマス生産の可能性" バイオオニックス 3: 38-43 (現在の雑誌名は"Medical Bio"へ変更)
  2. Shindo, T., Takahashi, T., Nihira, T., Yamada, Y., Kato, K. and Shinmyo, A. (2006) Streptomyces-derived induction system for gene expression in cultured plant cells. J. Biosci. Bioeng. 102: 552-559. doi: 10.1263/jbb.102.552 [PubMed]
  3. Kodama, Y., Nagaya, S., Sakurai, N., Shibata, D., Shinmyo, A. and Kato, K. (2006) Analysis of chromatin condensation states by DNase I sensitivity assay at 500-base resolution in Arabidopsis. Plant Biotech. 23: 451-457. doi: https://doi.org/10.5511/plantbiotechnology.23.451 [WebPage]
  4. Kato, K., Ishikura, K., Kasai, S. and Shinmyo, A. (2006) Efficient translation destabilizes transcripts in the chloroplasts of Chlamydomonas reinhardtii. J. Biosci. Bioeng. 101: 471-477. doi: 10.1263/jbb.101.471 [PubMed]
  5. 加藤 晃、長屋 進吾 "植物における効率的な有用遺伝子発現を目指して" バイオサイエンスとインダストリー 64: 332-333

~2005

  1. Kubo, M., Udagawa, M., Nishikubo, N., Horiguchi, G., Yamaguchi, M., Ito, J., Mimura, T., Fukuda, H. and Demura, T. (2005) Transcription switches for protoxylem and metaxylem vessel formation. Genes Dev. 19: 1855-1860. doi: 10.1101/gad.1331305 [PubMed]
  2. Nagaya, S., Kato, K., Ninomiya, Y., Horie, R., Sekine, M., Yoshida, K. and Shinmyo, A. (2005) Expression of randomly integrated single complete copy transgenes does not vary in Arabidopsis thaliana. Plant Cell Physiol. 46: 438-444. doi: 10.1093/pcp/pci039 [PubMed]
  3. Satoh, J., Kato, K., and Shinmyo, A. (2004) The 5'-untranslated region of the tobacco alcohol dehydrogenase gene functions as an effective translational enhancer in plant. J. Biosci. Bioeng. 98: 1-8. doi: 10.1016/S1389-1723(04)70234-0 [PubMed]
  4. Dansako, T., Kato, K., Satoh, J., Sekine, M., Yoshida, K. and Shinmyo, A. (2003) 5' untranslated region of the HSP18.2 gene contributes to efficient translation in plant cells. J. Biosci. Bioeng. 95: 52-58. doi: 10.1016/S1389-1723(03)80148-2 [PubMed]
  5. Demura, T., Tashiro, G., Horiguchi, G., Kishimoto, N., Kubo, M., Matsuoka, N., Minami, A., Nagata-Hiwatashi, M., Nakamura, K., Okamura, Y., Sassa, N., Suzuki, S., Yazaki, J., Kikuchi, S. and Fukuda, H. (2002) Visualization by comprehensive microarray analysis of gene expression programs during transdifferentiation of mesophyll cells into xylem cells. Proc. Natl. Acad. Sci. USA. 99: 15794-15799. doi: 10.1073/pnas.232590499 [PubMed]
  6. Nagaya, S., Yoshida, K., Kato, K., Akasaka, K. and Shinmyo, A. (2001) An insulator element from the sea urchin Hemicentrotus pulcherrimus suppresses variation in transgene expression in cultured tobacco cells. Mol. Genet. Genomics. 265: 405-413. doi: 10.1007/s004380100448 [WebPage]

 

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