研究業績一覧

Baba, T., Huan, H. C., Datsenko, K., Wanner, B. L. and Mori, H. (2008) The applications of systematic in-frame, single-gene knockout mutant collection of Escherichia coli K-12. Methods Mol Biol 416, 183-194.
( 2008/12/01 )

Baba, T. and Mori, H. (2008) The construction of systematic in-frame, single-gene knockout mutant collection in Escherichia coli K-12. Methods Mol Biol 416, 171-181.
( 2008/12/01 )

Furuita, K., Murata, S., Jee, J., Ichikawa, S., Matsuda, A. and Kojima, C. (2008) NMR structural study of DNA oligomers containing alkylene crosslinked cyclic 2'-deoxyuridylate dimers. Nucleic Acids Symp Ser (Oxf) (52), 181-182.
( 2008/12/01 )

Kinoshita, T., Ikeda, Y. and Ishikawa, R. (2008) Genomic imprinting: a balance between antagonistic roles of parental chromosomes. Semin Cell Dev Biol 19, 574-579.
( 2008/12/01 )

Kurita, Y., Kuraki, D., Ueda, E., Matsumoto, Y. and Ogasawara, T. (2008) Estimation of physical constraint condition by analyzing walking motions. Conf Proc IEEE Eng Med Biol Soc 2008, 5196-5199.
( 2008/12/01 )

Nakao, M., Yano, S., Matsuyuki, T., Kawamoto, T. and Minato, K. (2008) Interactive volume manipulation for supporting preoperative planning. Stud Health Technol Inform 132, 316-321.
( 2008/12/01 )

Sugiura, T., Nakao, M., Sato, T. and Minato, K. (2008) Nanomanipulation and nanotechnology for future diagnostics. Stud Health Technol Inform 134, 135-142.
( 2008/12/01 )

Takahashi, Y., Watanabe, T., Nakagawa, S., Kawakami, K. and Sato, Y. (2008) Transposon-mediated stable integration and tetracycline-inducible expression of electroporated transgenes in chicken embryos. Methods Cell Biol 87, 271-280.
( 2008/12/01 )

Takai, R., Isogai, A., Takayama, S. and Che, F. S. (2008) Analysis of flagellin perception mediated by flg22 receptor OsFLS2 in rice. Mol Plant Microbe Interact 21, 1635-1642.
( 2008/12/01 )

Tokuda, T., Asano, R., Hiyama, K., Terasawa, Y., Nishida, K., Kitaguchi, Y., Fujikado, T., Tano, Y. and Ohta, J. (2008) Multi-finger structure and pulsed-powering operation scheme for CMOS LSI-based flexible stimulator for retinal prosthesis. Conf Proc IEEE Eng Med Biol Soc 2008, 4212-4215.
( 2008/12/01 )

Terawaki, S., Kitano, K. and Hakoshima, T. (2008) Crystallographic characterization of the membrane-targeting domains of the Rac-specific guanine nucleotide-exchange factors Tiam1 and Tiam2. Acta Crystallogr Sect F Struct Biol Cryst Commun 64, 1039-1042.
( 2008/11/01 )

Kawabata, T. (2008) Multiple subunit fitting into a low-resolution density map of a macromolecular complex using a gaussian mixture model. Biophys J 95, 4643-4658.
( 2008/11/01 )

Kohyama, J., Kojima, T., Takatsuka, E., Yamashita, T., Namiki, J., Hsieh, J., Gage, F. H., Namihira, M., Okano, H., Sawamoto, K. and Nakashima, K. (2008) Epigenetic regulation of neural cell differentiation plasticity in the adult mammalian brain. Proc Natl Acad Sci U S A 105, 18012-18017.
( 2008/11/01 )

Hayashi, K. and Kojima, C. (2008) pCold-GST vector: a novel cold-shock vector containing GST tag for soluble protein production. Protein Expr Purif 62, 120-127.
( 2008/11/01 )

Koizumi, N. and Iwata, Y. (2008) Construction of a binary vector for transformation of Arabidopsis thaliana with a new selection marker. Biosci Biotechnol Biochem 72, 3041-3043.
( 2008/11/01 )

Miki, D. and Shimamoto, K. (2008) De novo DNA methylation induced by siRNA targeted to endogenous transcribed sequences is gene-specific and OsMet1-independent in rice. Plant J 56, 539-549.
( 2008/11/01 )

Takagi, H. (2008) Proline as a stress protectant in yeast: physiological functions, metabolic regulations, and biotechnological applications. Appl Microbiol Biotechnol 81, 211-223.
( 2008/11/01 )

Tsukada, Y., Aoki, K., Nakamura, T., Sakumura, Y., Matsuda, M. and Ishii, S. (2008) Quantification of local morphodynamics and local GTPase activity by edge evolution tracking. PLoS Comput Biol 4, e1000223.
( 2008/11/01 )

Uchida, K., Furukohri, A., Shinozaki, Y., Mori, T., Ogawara, D., Kanaya, S., Nohmi, T., Maki, H. and Akiyama, M. (2008) Overproduction of Escherichia coli DNA polymerase DinB (Pol IV) inhibits replication fork progression and is lethal. Mol Microbiol 70, 608-622
( 2008/11/01 )

Murase, K., Hirano, Y., Sun, T. P. and Hakoshima, T. (2008) Gibberellin-induced DELLA recognition by the gibberellin receptor GID1. Nature 456, 459-463.
( 2008/11/01 )

Terawaki, S., Kitano, K., Aoyama, M. and Hakoshima, T. (2008) Crystallographic characterization of the radixin FERM domain bound to the cytoplasmic tail of membrane-type 1 matrix metalloproteinase (MT1-MMP). Acta Crystallogr Sect F Struct Biol Cryst Commun 64, 911-913.
( 2008/10/01 )

Mori, M., Yoneda-Kato, N., Yoshida, A. and Kato, J. Y. (2008) Stable form of JAB1 enhances proliferation and maintenance of hematopoietic progenitors. J Biol Chem 283, 29011-29021.
( 2008/10/01 )

Mori, T., Kitano, K., Terawaki, S., Maesaki, R., Fukami, Y. and Hakoshima, T. (2008) Structural basis for CD44 recognition by ERM proteins. J Biol Chem 283, 29602-29612.
( 2008/10/01 )

Hayashi, K. and Kojima, C. (2008) [Regulation mechanism of Na+/H+ exchanger]. Seikagaku 80, 925-932.
( 2008/10/01 )

Takai, Y., Kitano, K., Terawaki, S., Maesaki, R. and Hakoshima, T. (2008) Structural basis of the cytoplasmic tail of adhesion molecule CD43 and its binding to ERM proteins. J Mol Biol 381, 634-644.
( 2008/09/01 )

Tajima, H., Iwata, Y., Iwano, M., Takayama, S. and Koizumi, N. (2008) Identification of an Arabidopsis transmembrane bZIP transcription factor involved in the endoplasmic reticulum stress response. Biochem Biophys Res Commun 374, 242-247.
( 2008/09/01 )

Kaino, T., Tateiwa, T., Mizukami-Murata, S., Shima, J. and Takagi, H. (2008) Self-cloning baker's yeasts that accumulate proline enhance freeze tolerance in doughs. Appl Environ Microbiol 74, 5845-5849.
( 2008/09/01 )

Kobayashi, K. (2008) SlrR/SlrA controls the initiation of biofilm formation in Bacillus subtilis. Mol Microbiol 69, 1399-1410.
( 2008/09/01 )

Ukibe, K., Katsuragi, T., Tani, Y. and Takagi, H. (2008) Efficient screening for astaxanthin-overproducing mutants of the yeast Xanthophyllomyces dendrorhous by flow cytometry. FEMS Microbiol Lett 286, 241-248.
( 2008/09/01 )

Tamura, H., Ng, D. C., Tokuda, T., Naoki, H., Nakagawa, T., Mizuno, T., Hatanaka, Y., Ishikawa, Y., Ohta, J. and Shiosaka, S. (2008) One-chip sensing device (biomedical photonic LSI) enabled to assess hippocampal steep and gradual up-regulated proteolytic activities. J Neurosci Methods 173, 114-120.
( 2008/08/01 )

Sanosaka, T., Namihira, M., Asano, H., Kohyama, J., Aisaki, K., Igarashi, K., Kanno, J. and Nakashima, K. (2008) Identification of genes that restrict astrocyte differentiation of midgestational neural precursor cells. Neuroscience 155, 780-788.
( 2008/08/01 )

Chung, K. M., Igari, K., Uchida, N. and Tasaka, M. (2008) New perspectives on plant defense responses through modulation of developmental pathways. Mol Cells 26, 107-112.
( 2008/08/01 )

Kobayashi, M., Hara, K., Yu, R. T. and Yasuda, K. (2008) Expression and functional analysis of Nr2e3, a photoreceptor-specific nuclear receptor, suggest common mechanisms in retinal development between avians and mammals. Dev Genes Evol 218, 439-444.
( 2008/08/01 )

Nakashima, A., Chen, L., Thao, N. P., Fujiwara, M., Wong, H. L., Kuwano, M., Umemura, K., Shirasu, K., Kawasaki, T. and Shimamoto, K. (2008) RACK1 functions in rice innate immunity by interacting with the Rac1 immune complex. Plant Cell 20, 2265-2279.
( 2008/08/01 )

Shoji, T. and Hashimoto, T. (2008) Why does anatabine, but not nicotine, accumulate in jasmonate-elicited cultured tobacco BY-2 cells? Plant Cell Physiol 49, 1209-1216.
( 2008/08/01 )

Takahashi, H., Kai, K., Shinbo, Y., Tanaka, K., Ohta, D., Oshima, T., Altaf-Ul-Amin, M., Kurokawa, K., Ogasawara, N. and Kanaya, S. (2008) Metabolomics approach for determining growth-specific metabolites based on Fourier transform ion cyclotron resonance mass spectrometry. Anal Bioanal Chem 391, 2769-2782.
( 2008/08/01 )

Takeuchi, M., Kimata, Y. and Kohno, K. (2008) Saccharomyces cerevisiae Rot1 is an essential molecular chaperone in the endoplasmic reticulum. Mol Biol Cell 19, 3514-3525.
( 2008/08/01 )

Urano, D., Nakata, A., Mizuno, N., Tago, K. and Itoh, H. (2008) Domain-domain interaction of P-Rex1 is essential for the activation and inhibition by G protein betagamma subunits and PKA. Cell Signal 20, 1545-1554.
( 2008/08/01 )

Chung, K. M. and Sano, H. (2008) Finding a missing link in MAP kinase cascade. Plant Signal Behav 3, 606-608.
( 2008/08/01 )

Fukuhara, N. and Kawabata, T. (2008) HOMCOS: a server to predict interacting protein pairs and interacting sites by homology modeling of complex structures. Nucleic Acids Res 36, W185-9.
( 2008/07/01 )

Yao, M., Wakamatsu, Y., Itoh, T. J., Shoji, T. and Hashimoto, T. (2008) Arabidopsis SPIRAL2 promotes uninterrupted microtubule growth by suppressing the pause state of microtubule dynamics. J Cell Sci 121, 2372-2381.
( 2008/07/01 )

Shibata, K., Yamagishi, N., Goda, N., Yoshioka, T., Yamashita, O., Sato, M. A. and Kawato, M. (2008) The effects of feature attention on prestimulus cortical activity in the human visual system. Cereb Cortex 18, 1664-1675.
( 2008/07/01 )

Shoji, T., Ogawa, T. and Hashimoto, T. (2008) Jasmonate-induced nicotine formation in tobacco is mediated by tobacco COI1 and JAZ genes. Plant Cell Physiol 49, 1003-1012.
( 2008/07/01 )

Igari, K., Endo, S., Hibara, K., Aida, M., Sakakibara, H., Kawasaki, T. and Tasaka, M. (2008) Constitutive activation of a CC-NB-LRR protein alters morphogenesis through the cytokinin pathway in Arabidopsis. Plant J 55, 14-27.
( 2008/07/01 )

Shikauchi, M., Ishii, S. and Shibata, T. (2008) Prediction of aperiodic target sequences by saccades. Behav Brain Res 189, 325-331.
( 2008/06/01 )

Kotani, T. and Takagi, H. (2008) Identification of amino acid residues essential for the yeast N-acetyltransferase Mpr1 activity by site-directed mutagenesis. FEMS Yeast Res 8, 607-614.
( 2008/06/01 )

Takahashi, Y. and Sato, Y. (2008) Somitogenesis as a model to study the formation of morphological boundaries and cell epithelialization. Dev Growth Differ 50 Suppl 1, S149-55.
( 2008/06/01 )

Shimada, T., Toriyama, M., Uemura, K., Kamiguchi, H., Sugiura, T., Watanabe, N. and Inagaki, N. (2008) Shootin1 interacts with actin retrograde flow and L1-CAM to promote axon outgrowth. J Cell Biol 181, 817-829.
( 2008/06/01 )

Namihira, M., Kohyama, J., Abematsu, M. and Nakashima, K. (2008) Epigenetic mechanisms regulating fate specification of neural stem cells. Philos Trans R Soc Lond B Biol Sci 363, 2099-2109.
( 2008/06/01 )

Horii, Y., Yamasaki, N., Miyakawa, T. and Shiosaka, S. (2008) Increased anxiety-like behavior in neuropsin (kallikrein-related peptidase 8) gene-deficient mice. Behav Neurosci 122, 498-504.
( 2008/06/01 )

Sato, Y., Watanabe, T., Saito, D., Takahashi, T., Yoshida, S., Kohyama, J., Ohata, E., Okano, H. and Takahashi, Y. (2008) Notch mediates the segmental specification of angioblasts in somites and their directed migration toward the dorsal aorta in avian embryos. Dev Cell 14, 890-901.
( 2008/06/01 )

Takenouchi, T., Eguchi, S., Murata, N. and Kanamori, T. (2008) Robust boosting algorithm against mislabeling in multiclass problems. Neural Comput 20, 1596-1630.
( 2008/06/01 )

Harada, A., Shiosaka, S., Ishikawa, Y. and Komai, S. (2008) Acute stress increases neuropsin mRNA expression in the mouse hippocampus through the glucocorticoid pathway. Neurosci Lett 436, 273-277.
( 2008/05/01 )

Iguchi, T., Sakata, K., Yoshizaki, K., Tago, K., Mizuno, N. and Itoh, H. (2008) Orphan G protein-coupled receptor GPR56 regulates neural progenitor cell migration via a G alpha 12/13 and Rho pathway. J Biol Chem 283, 14469-14478.
( 2008/05/01 )

Oikawa, Y., Matsuda, E., Nishii, T., Ishida, Y. and Kawaichi, M. (2008) Down-regulation of CIBZ, a novel substrate of caspase-3, induces apoptosis. J Biol Chem 283, 14242-14247.
( 2008/05/01 )

Hasegawa, K., Yoshiyama, K. and Maki, H. (2008) Spontaneous mutagenesis associated with nucleotide excision repair in Escherichia coli. Genes Cells 13, 459-469.
( 2008/05/01 )

Kaino, T. and Takagi, H. (2008) Gene expression profiles and intracellular contents of stress protectants in Saccharomyces cerevisiae under ethanol and sorbitol stresses. Appl Microbiol Biotechnol 79, 273-283.
( 2008/05/01 )

Furukohri, A., Goodman, M. F. and Maki, H. (2008) A dynamic polymerase exchange with Escherichia coli DNA polymerase IV replacing DNA polymerase III on the sliding clamp. J Biol Chem 283, 11260-11269.
( 2008/04/01 )

Ueda, Y., Koya, T., Yoneda-Kato, N. and Kato, J. Y. (2008) Small mitochondrial ARF (smARF) is located in both the nucleus and cytoplasm, induces cell death, and activates p53 in mouse fibroblasts. FEBS Lett 582, 1459-1464.
( 2008/04/01 )

Ashida, H., Saito, Y., Nakano, T., Tandeau de Marsac, N., Sekowska, A., Danchin, A. and Yokota, A. (2008) RuBisCO-like proteins as the enolase enzyme in the methionine salvage pathway: functional and evolutionary relationships between RuBisCO-like proteins and photosynthetic RuBisCO. J Exp Bot 59, 1543-1554.
( 2008/04/01 )

Ashida, H., Saito, Y., Kojima, C. and Yokota, A. (2008) Enzymatic characterization of 5-methylthioribulose-1-phosphate dehydratase of the methionine salvage pathway in Bacillus subtilis. Biosci Biotechnol Biochem 72, 959-967.
( 2008/04/01 )

Cho, E., Ogasawara, N. and Ishikawa, S. (2008) The functional analysis of YabA, which interacts with DnaA and regulates initiation of chromosome replication in Bacillus subtils. Genes Genet Syst 83, 111-125.
( 2008/04/01 )

Imagawa, Y., Hosoda, A., Sasaka, S., Tsuru, A. and Kohno, K. (2008) RNase domains determine the functional difference between IRE1alpha and IRE1beta. FEBS Lett 582, 656-660.
( 2008/03/01 )

Sadamasa, N., Nozaki, K., Kita-Matsuo, H., Saito, S., Moriwaki, T., Aoki, T., Kawarazaki, S., Kataoka, H., Takagi, Y., Ishikawa, M., Hashimoto, N. and Kato, K. (2008) Gene expression during the development of experimentally induced cerebral aneurysms. J Vasc Res 45, 343-349.
( 2008/03/01 )

Abe, M., Fujiwara, M., Kurotani, K., Yokoi, S. and Shimamoto, K. (2008) Identification of dynamin as an interactor of rice GIGANTEA by tandem affinity purification (TAP). Plant Cell Physiol 49, 420-432.
( 2008/03/01 )

Kodama, Y., Shinya, T. and Sano, H. (2008) Dimerization of N-methyltransferases involved in caffeine biosynthesis. Biochimie 90, 547-551.
( 2008/03/01 )

Sugio, T., Satoh, J., Matsuura, H., Shinmyo, A. and Kato, K. (2008) The 5'-untranslated region of the Oryza sativa alcohol dehydrogenase gene functions as a translational enhancer in monocotyledonous plant cells. J Biosci Bioeng 105, 300-302.
( 2008/03/01 )

Hirano, H., Harashima, H., Shinmyo, A. and Sekine, M. (2008) Arabidopsis RETINOBLASTOMA-RELATED PROTEIN 1 is involved in G1 phase cell cycle arrest caused by sucrose starvation. Plant Mol Biol 66, 259-275.
( 2008/02/01 )

Ichikawa, K., Miyake, C., Iwano, M., Sekine, M., Shinmyo, A. and Kato, K. (2008) Ribulose 1,5-bisphosphate carboxylase/oxygenase large subunit translation is regulated in a small subunit-independent manner in the expanded leaves of tobacco. Plant Cell Physiol 49, 214-225.
( 2008/02/01 )

Kim, Y. S. and Sano, H. (2008) Pathogen resistance of transgenic tobacco plants producing caffeine. Phytochemistry 69, 882-888.
( 2008/02/01 )

Yoshimura, K., Masuda, A., Kuwano, M., Yokota, A. and Akashi, K. (2008) Programmed proteome response for drought avoidance/tolerance in the root of a C(3) xerophyte (wild watermelon) under water deficits. Plant Cell Physiol 49, 226-241.
( 2008/02/01 )

Haitani, Y. and Takagi, H. (2008) Rsp5 is required for the nuclear export of mRNA of HSF1 and MSN2/4 under stress conditions in Saccharomyces cerevisiae. Genes Cells 13, 105-116.
( 2008/02/01 )

Komiya, R., Ikegami, A., Tamaki, S., Yokoi, S. and Shimamoto, K. (2008) Hd3a and RFT1 are essential for flowering in rice. Development 135, 767-774.
( 2008/02/01 )

Kurita, Y., Kempf, R., Iida, Y., Okude, J., Kaneko, M., Mishima, H. K., Tsukamoto, H., Sugimoto, E., Katakura, S., Kobayashi, K. and Kiuchi, Y. (2008) Contact-based stiffness sensing of human eye. IEEE Trans Biomed Eng 55, 739-745.
( 2008/02/01 )

Namihira, M. and Nakashima, K. (2008) [Epigenetic regulation of neural stem cell fate specification]. Seikagaku 80, 105-110.
( 2008/02/01 )

Sakurai, S., Kitano, K., Morioka, H. and Hakoshima, T. (2008) Crystallization and preliminary crystallographic analysis of the catalytic domain of human flap endonuclease 1 in complex with a nicked DNA product: use of a DPCS kit for efficient protein-DNA complex crystallization. Acta Crystallogr Sect F Struct Biol Cryst Commun 64, 39-43.
( 2008/01/01 )

Okano, Y., Miki, D. and Shimamoto, K. (2008) Small interfering RNA (siRNA) targeting of endogenous promoters induces DNA methylation, but not necessarily gene silencing, in rice. Plant J 53, 65-77.
( 2008/01/01 )

Yoneda-Kato, N. and Kato, J. Y. (2008) Shuttling imbalance of MLF1 results in p53 instability and increases susceptibility to oncogenic transformation. Mol Cell Biol 28, 422-434.
( 2008/01/01 )

Ishikawa, Y., Horii, Y., Tamura, H. and Shiosaka, S. (2008) Neuropsin (KLK8)-dependent and -independent synaptic tagging in the Schaffer-collateral pathway of mouse hippocampus. J Neurosci 28, 843-849.
( 2008/01/01 )

Kobayashi, K., Kuwana, R. and Takamatsu, H. (2008) kinA mRNA is missing a stop codon in the undomesticated Bacillus subtilis strain ATCC 6051. Microbiology 154, 54-63.
( 2008/01/01 )

Matsuura, H., Shinmyo, A. and Kato, K. (2008) Preferential translation mediated by Hsp81-3 5'-UTR during heat shock involves ribosome entry at the 5'-end rather than an internal site in Arabidopsis suspension cells. J Biosci Bioeng 105, 39-47.
( 2008/01/01 )