研究業績の紹介

研究業績の紹介

2014年12月

2014年11月

Nasuno R, Aitoku M, Manago Y, Nishimura A, Sasano Y, Takagi H. (2014) Nitric Oxide-Mediated Antioxidative Mechanism in Yeast through the Activation of the Transcription Factor Mac1. PLoS One. 2014 Nov 25;9(11):e113788. doi: 10.1371/journal.pone.0113788. eCollection 2014.
( 2014/11/25 )

Zargar SM, Kurata R, Rakwal R, Fukao Y. (2014) Peptide Separation Methodologies for In-depth Proteomics. Methods Mol Biol. 2015;1242:195-209. doi: 10.1007/978-1-4939-1902-4_17.
( 2014/11/20 )

Toyoda K, Teramoto H, Yukawa H, Inui M. (2014) Expanding the Regulatory Network Governed by the ECF-family Sigma factor σH in Corynebacterium glutamicum. J Bacteriol. 2015 Feb 1;197(3):483-96. doi: 10.1128/JB.02248-14. Epub 2014 Nov 17.
( 2014/11/17 )

Otsuka Y, Muto A, Takeuchi R, Okada C, Ishikawa M, Nakamura K, Yamamoto N, Dose H, Nakahigashi K, Tanishima S, Suharnan S, Nomura W, Nakayashiki T, Aref WG, Bochner BR, Conway T, Gribskov M, Kihara D, Rudd KE, Tohsato Y, Wanner BL, Mori H. (2014) GenoBase: comprehensive resource database of Escherichia coli K-12. Nucleic Acids Res. 2015 Jan 28;43(Database issue):D606-17. doi:10.1093/nar/gku1164. Epub 2014 Nov 15.
( 2014/11/15 )

Wijayanti I, Watanabe D, Oshiro S, Takagi H. (2014) Isolation and functional analysis of yeast ubiquitin ligase Rsp5 variants that alleviate the toxicity of human α-synuclein. J Biochem. 2014 Nov 14. pii: mvu069.
( 2014/11/14 )

Zargar SM, Fujiwara M, Inaba S, Kobayashi M, Kurata R, Ogata Y, Fukao Y. (2014) Correlation analysis of proteins responsive to Zn, Mn, or Fe deficiency in Arabidopsis roots based on iTRAQ analysis. Plant Cell Rep. 2015 Jan;34(1):157-66. doi: 10.1007/s00299-014-1696-2. Epub 2014 Nov 1.
( 2014/11/01 )

2014年10月

Kitano K. (2014) Structural mechanisms of human RecQ helicases WRN and BLM. Front Genet. 2014 Oct 29;5:366. doi: 10.3389/fgene.2014.00366. eCollection 2014.
( 2014/10/29 )

Malik A, Hapsari MT, Ohtsu I, Ishikawa S, Takagi H. (2014) Cloning and heterologous expression of the ftfCNC-2(1) gene from Weissella confusa MBFCNC-2(1) as an extracellular active fructansucrase in Bacillus subtilis. J Biosci Bioeng. 2014 Oct 29. pii: S1389-1723(14)00360-0. doi:10.1016/j.jbiosc.2014.09.024.
( 2014/10/29 )

Hasan MZ, Ikawati M, Tocharus J, Kawaichi M, Oka C. (2014) Abnormal development of placenta in HtrA1-deficient mice. Dev Biol. 2015 Jan 1;397(1):89-102. doi: 10.1016/j.ydbio.2014.10.015. Epub 2014 Oct 27.
( 2014/10/27 )

Kato K, Shoji T, Hashimoto T. (2014) Tobacco nicotine uptake permease regulates the expression of a key transcription factor gene in the nicotine biosynthesis pathway. Plant Physiol. 2014 Dec;166(4):2195-204. doi: 10.1104/pp.114.251645. Epub 2014 Oct 24.
( 2014/10/24 )

Kawano Y, Kaneko-Kawano T, Shimamoto K. (2014) Rho family GTPase-dependent immunity in plants and animals. Front Plant Sci. 2014 Oct 14;5:522. doi: 10.3389/fpls.2014.00522. eCollection 2014.
( 2014/10/14 )

Suetsugu S, Kurisu S, Takenawa T. (2014) Dynamic Shaping of Cellular Membranes by Phospholipids and Membrane-Deforming Proteins. Physiol Rev. 2014 Oct;94(4):1219-48. doi: 10.1152/physrev.00040.2013.
( 2014/10/08 )

Munekage YN, Inoue S, Yoneda Y, Yokota A. (2014) Distinct palisade tissue development processes promoted by leaf-autonomous signaling and long-distance signaling in Arabidopsis thaliana. Plant Cell Environ. 2014 Oct 8. doi: 10.1111/pce.12466.
( 2014/10/08 )

2014年09月

Yin K, Ueda M, Takagi H, Kajihara T, Sugamata Aki S, Nobusawa T, Umeda-Hara C, Umeda M. (2014) A dual-color marker system for in vivo visualization of cell cycle progression in Arabidopsis. Plant J. 2014 Nov;80(3):541-52. doi: 10.1111/tpj.12652. Epub 2014 Sep 29.
( 2014/09/29 )

Endo H, Yamaguchi M, Tamura T, Nakano Y, Nishikubo N, Yoneda A, Kato K, Kubo M, Kajita S, Katayama Y, Ohtani M, Demura T. (2014) Multiple classes of transcription factors regulate the expression of VASCULAR-RELATED NAC-DOMAIN7, a master switch of xylem vessel differentiation. Plant Cell Physiol. 2014 Sep 29. pii: pcu134.
( 2014/09/29 )

Kawano Y, Ohtsu I, Tamakoshi A, Shiroyama M, Tsuruoka A, Saiki K, Takumi K, Nonaka G, Nakanishi T, Hishiki T, Suematsu M, Takagi H. (2014) Involvement of the yciW gene in l-cysteine and l-methionine metabolism in Escherichia coli. J Biosci Bioeng. 2014 Sep 29. pii: S1389-1723(14)00302-8. doi:10.1016/j.jbiosc.2014.08.012.
( 2014/09/29 )

Takahashi N, Hamada-Nakahara S, Itoh Y, Takemura K, Shimada A, Ueda Y, Kitamata M, Matsuoka R, Hanawa-Suetsugu K, Senju Y, Mori MX, Kiyonaka S, Kohda D, Kitao A, Mori Y, Suetsugu S. (2014) TRPV4 channel activity is modulated by direct interaction of the ankyrin domain to PI(4,5)P2. Nat Commun. 2014 Sep 26;5:4994. doi: 10.1038/ncomms5994.
( 2014/09/26 )

Fujimuro T, Matsui T, Nitanda Y, Matta T, Sakumura Y, Saito M, Kohno K, Nakahata Y, Bessho Y. (2014) Hes7 3'UTR is required for somite segmentation function. Sci Rep. 2014 Sep 24;4:6462. doi: 10.1038/srep06462.
( 2014/09/24 )

Buzas DM, Nakamura M, Kinoshita T. (2014) Epigenetic role for the conserved Fe-S cluster biogenesis protein AtDRE2 in Arabidopsis thaliana. Proc Natl Acad Sci U S A. 2014 Sep 16;111(37):13565-70. doi:10.1073/pnas.1404058111. Epub 2014 Sep 2.
( 2014/09/02 )

2014年08月

2014年07月

2014年06月

Tanaka Y, Takemoto N, Ito T, Teramoto H, Yukawa H, Inui M. (2014) Genome-wide analysis of the role of global transcriptional regulator GntR1 in Corynebacterium glutamicum. J Bacteriol. : pii: JB.01860-14.
( 2014/06/30 )

Takeuchi R, Tamura T, Nakayashiki T, Tanaka Y, Muto A, Wanner BL, Mori H. (2014) Colony-live -a high-throughput method for measuring microbial colony growth kinetics- reveals diverse growth effects of gene knockouts in Escherichia coli. BMC Microbiol. 14 (1) : 171
( 2014/06/26 )

Ikeda M, Furukohri A, Philippin G, Loechler E, Akiyama MT, Katayama T, Fuchs RP, Maki H. (2014) DNA polymerase IV mediates efficient and quick recovery of replication forks stalled at N2-dG adducts. Nucleic Acids Res. pii: gku547.
( 2014/06/23 )

Kato K, Shitan N, Shoji T, Hashimoto T. (2014) Tobacco NUP1 transports both tobacco alkaloids and vitamin B6. Phytochemistry. pii: S0031-9422(14)00222-2.
( 2014/06/16 )

Shoji T, Hashimoto T. (2014) Stress-induced expression of NICOTINE2-locus genes and their homologs encoding Ethylene Response Factor transcription factors in tobacco. Phytochemistry. pii: S0031-9422(14)00228-3.
( 2014/06/16 )

Kuge T, Teramoto H, Yukawa H, Inui M. (2014) The LacI-Type Transcriptional Regulator AraR Acts as an l-Arabinose-Responsive Repressor of l-Arabinose Utilization Genes in Corynebacterium glutamicum ATCC 31831. J Bacteriol. 196 (12) : 2242-2254
( 2014/06/15 )

Miyagawa K, Ishiwata-Kimata Y, Kohno K, Kimata Y. (2014) Ethanol stress impairs protein folding in the endoplasmic reticulum and activates Ire1 in Saccharomyces cerevisiae. Biosci Biotechnol Biochem. 2014;78(8):1389-91. doi: 10.1080/09168451.2014.921561. Epub 2014 Jun 12.
( 2014/06/12 )

Takahashi N, Umeda M (2014) Cytokinins promote onset of endoreplication by controlling cell cycle machinery. Plant Signal Behav. 2014 Jun 4;9. pii: e29396.
( 2014/06/04 )

Fukuda T, Fukuda N, Agostinho A, Hernández-Hernández A, Kouznetsova A, Höög C. (2014) STAG3-mediated stabilization of REC8 cohesin complexes promotes chromosome synapsis during meiosis. EMBO J. 33 (11) : 1243-1255
( 2014/06/02 )

2014年05月

2014年04月

Kamiuchi Y, Yamamoto K, Furutani M, Tasaka M, Aida M. (2014) The CUC1 and CUC2 genes promote carpel margin meristem formation during Arabidopsis gynoecium development. Front Plant Sci. 5: 165
( 2014/04/30 )

Ueda K, Okawara R, Yamasaki S, Sanada Y, Kinoshita E, Yoneda A, Demura T, Kato K. (2014) Efficient transgene expression by alleviation of translational repression in plant cells. J Biosci Bioeng. 2014 Oct;118(4):434-40. doi: 10.1016/j.jbiosc.2014.03.007. Epub 2014 Apr 18.
( 2014/04/18 )

Kumazaki K, Chiba S, Takemoto M, Furukawa A, Nishiyama KI, Sugano Y, Mori T, Dohmae N, Hirata K, Nakada-Nakura Y, Maturana AD, Tanaka Y, Mori H, Sugita Y, Arisaka F, Ito K, Ishitani R, Tsukazaki T, Nureki O. (2014) Structural basis of Sec-independent membrane protein insertion by YidC. Nature. 2014 May 22;509(7501):516-20. doi: 10.1038/nature13167. Epub 2014 Apr 16.
( 2014/04/16 )

Yoshiyama KO, Kimura S, Maki H, Britt AB, Umeda M. (2014) The role of SOG1, a plant-specific transcriptional regulator, in the DNA damage response. Plant Signal Behav. 2014;9(4):e28889.
( 2014/04/15 )

Hashiguchi Y, Yano D, Nagafusa K, Kato T, Saito C, Uemura T, Ueda T, Nakano A, Tasaka M, Morita MT. (2014) A Unique HEAT Repeat-Containing Protein SHOOT GRAVITROPISM6 is Involved in Vacuolar Membrane Dynamics in Gravity-Sensing Cells of Arabidopsis Inflorescence Stem. Plant Cell Physiol. 55 (4) : 811-822
( 2014/04/01 )

Fujiwara M, Uemura T, Ebine K, Nishimori Y, Ueda T, Nakano A, Sato MH, Fukao Y. (2014) Interactomics of Qa-SNARE in Arabidopsis thaliana. Plant Cell Physiol. 55 (4) : 781-789
( 2014/04/01 )

Inada N, Ueda T. (2014) Membrane Trafficking Pathways and their Roles in Plant-Microbe Interactions. Plant Cell Physiol. 55 (4) : 672-686
( 2014/04/01 )

Nagano M, Ishikawa T, Ogawa Y, Iwabuchi M, Nakasone A, Shimamoto K, Uchimiya H, Kawai-Yamada M. (2014) Arabidopsis Bax inhibitor-1 promotes sphingolipid synthesis during cold stress by interacting with ceramide-modifying enzymes. Planta. 2014 Jul;240(1):77-89. doi: 10.1007/s00425-014-2065-7. Epub 2014 Apr 1.
( 2014/04/01 )

2014年03月

2014年02月

2014年01月

Takatsuka H, Umeda M. (2014) Hormonal control of cell division and elongation along differentiation trajectories in roots. J Exp Bot. 2014 Jun;65(10):2633-43. doi: 10.1093/jxb/ert485. Epub 2014 Jan 28.
( 2014/01/28 )

Furutani M, Nakano Y, Tasaka M. (2014) MAB4-induced auxin sink generates local auxin gradients in Arabidopsis organ formation. Proc Natl Acad Sci U S A. 111 (3) : 1198-1203
( 2014/01/21 )

Ross A, Yamada K, Hiruma K, Yamashita-Yamada M, Lu X, Takano Y, Tsuda K, Saijo Y. (2014) The Arabidopsis PEPR pathway couples local and systemic plant immunity. EMBO J. 33 (1) : 62-75
( 2014/01/07 )

Kosami KI, Ohki I, Hayashi K, Tabata R, Usugi S, Kawasaki T, Fujiwara T, Nakagawa A, Shimamoto K, Kojima C. (2014) Purification, crystallization and preliminary X-ray crystallographic analysis of a rice Rac/Rop GTPase, OsRac1. Acta Crystallogr Sect F Struct Biol Cryst Commun. 70 (Pt 1) : 113-115
( 2014/01/02 )

Retnoaji B, Akiyama R, Matta T, Bessho Y, Matsui T. (2014) Retinoic acid controls proper head-to-trunk linkage in zebrafish by regulating an anteroposterior somitogenetic rate difference. Development 141 (1) : 158-165
( 2014/01/01 )

Yong HT, Yamamoto N, Takeuchi R, Hsieh YJ, Conrad TM, Datsenko KA, Nakayashiki T, Wanner BL, Mori H. (2013) Development of a system for discovery of genetic interactions for essential genes in Escherichia coli K-12. Genes Genet Syst. 88 (4) : 233-240
( 2014/01/01 )

Yoshida N, Inaba S, Takagi H. (2014) Utilization of atmospheric ammonia by an extremely oligotrophic bacterium, Rhodococcus erythropolis N9T-4. J Biosci Bioeng. 117 (1) : 28-32
( 2014/01/01 )

Nitanda Y, Matsui T, Matta T, Higami A, Kohno K, Nakahata Y, Bessho Y. (2014) 3'-UTR-dependent regulation of mRNA turnover is critical for differential distribution patterns of cyclic gene mRNAs. FEBS J. 281 (1) : 146-156
( 2014/01/01 )