研究業績の紹介

研究業績の紹介

2007年12月

Hayashi, K., Sudo, Y., Jee, J., Mishima, M., Hara, H., Kamo, N. and Kojima, C. (2007) Structural analysis of the phototactic transducer protein HtrII linker region from Natronomonas pharaonis. Biochemistry 46, 14380-14390.
( 2007/12/01 )

Aramata, S., Han, S. I. and Kataoka, K. (2007) Roles and regulation of transcription factor MafA in islet beta-cells. Endocr J 54, 659-666.
( 2007/12/01 )

Chung, K. M. and Sano, H. (2007) Transactivation of wound-responsive genes containing the core sequence of the auxin-responsive element by a wound-induced protein kinase-activated transcription factor in tobacco plants. Plant Mol Biol 65, 763-773.
( 2007/12/01 )

Fukaki, H., Okushima, Y. and Tasaka, M. (2007) Auxin-mediated lateral root formation in higher plants. Int Rev Cytol 256, 111-137.
( 2007/12/01 )

Hakoshima, T. and Ichihara, H. (2007) Structure of SixA, a histidine protein phosphatase of the ArcB histidine-containing phosphotransfer domain in Escherichia coli. Methods Enzymol 422, 288-304.
( 2007/12/01 )

Kakita, M., Murase, K., Iwano, M., Matsumoto, T., Watanabe, M., Shiba, H., Isogai, A. and Takayama, S. (2007) Two distinct forms of M-locus protein kinase localize to the plasma membrane and interact directly with S-locus receptor kinase to transduce self-incompatibility signaling in Brassica rapa. Plant Cell 19, 3961-3973.
( 2007/12/01 )

Kurita, Y., Iida, Y., Kaneko, M., Mishima, H. K., Katakura, S. and Kiuchi, Y. (2007) Simultaneous measurement of eye stiffness and contact area for living human eyes. Conf Proc IEEE Eng Med Biol Soc 2007, 2779-2782.
( 2007/12/01 )

Mizutani, A., Sanuki, R., Kakimoto, K., Kojo, S. and Taketani, S. (2007) Involvement of 101F6, a homologue of cytochrome b561, in the reduction of ferric ions. J Biochem 142, 699-705.
( 2007/12/01 )

Nakamura, Y., Kimura, A., Saga, H., Oikawa, A., Shinbo, Y., Kai, K., Sakurai, N., Suzuki, H., Kitayama, M., Shibata, D., Kanaya, S. and Ohta, D. (2007) Differential metabolomics unraveling light/dark regulation of metabolic activities in Arabidopsis cell culture. Planta 227, 57-66.
( 2007/12/01 )

Thao, N. P., Chen, L., Nakashima, A., Hara, S., Umemura, K., Takahashi, A., Shirasu, K., Kawasaki, T. and Shimamoto, K. (2007) RAR1 and HSP90 form a complex with Rac/Rop GTPase and function in innate-immune responses in rice. Plant Cell 19, 4035-4045.
( 2007/12/01 )

Tokuda, T., Asano, R., Sugitani, S., Terasawa, Y., Nunoshita, M., Nakauchi, K., Fujikado, T., Tano, Y. and Ohta, J. (2007) In vivo stimulation on rabbit retina using CMOS LSI-based multi-chip flexible stimulator for retinal prosthesis. Conf Proc IEEE Eng Med Biol Soc 2007, 5791-5794.
( 2007/12/01 )

Wong, H. L., Pinontoan, R., Hayashi, K., Tabata, R., Yaeno, T., Hasegawa, K., Kojima, C., Yoshioka, H., Iba, K., Kawasaki, T. and Shimamoto, K. (2007) Regulation of rice NADPH oxidase by binding of Rac GTPase to its N-terminal extension. Plant Cell 19, 4022-4034.
( 2007/12/01 )

Demae, M., Murata, Y., Hisano, M., Haitani, Y., Shima, J. and Takagi, H. (2007) Overexpression of two transcriptional factors, Kin28 and Pog1, suppresses the stress sensitivity caused by the rsp5 mutation in Saccharomyces cerevisiae. FEMS Microbiol Lett 277, 70-78.
( 2007/12/01 )

Kohno, K. (2007) How transmembrane proteins sense endoplasmic reticulum stress. Antioxid Redox Signal 9, 2295-2303.
( 2007/12/01 )

Takai, Y., Kitano, K., Terawaki, S., Maesaki, R. and Hakoshima, T. (2007) Structural basis of PSGL-1 binding to ERM proteins. Genes Cells 12, 1329-1338.
( 2007/12/01 )

2007年11月

Furutani, M., Kajiwara, T., Kato, T., Treml, B. S., Stockum, C., Torres-Ruiz, R. A. and Tasaka, M. (2007) The gene MACCHI-BOU 4/ENHANCER OF PINOID encodes a NPH3-like protein and reveals similarities between organogenesis and phototropism at the molecular level. Development 134, 3849-3859.
( 2007/11/01 )

Harashima, H., Shinmyo, A. and Sekine, M. (2007) Phosphorylation of threonine 161 in plant cyclin-dependent kinase A is required for cell division by activation of its associated kinase. Plant J 52, 435-448.
( 2007/11/01 )

Shiba, H. and Takayama, S. (2007) RNA silencing systems and their relevance to allele-specific DNA methylation in plants. Biosci Biotechnol Biochem 71, 2632-2646.
( 2007/11/01 )

Yoshida, N., Ohhata, N., Yoshino, Y., Katsuragi, T., Tani, Y. and Takagi, H. (2007) Screening of carbon dioxide-requiring extreme oligotrophs from soil. Biosci Biotechnol Biochem 71, 2830-2832.
( 2007/11/01 )

Kogo, S., Ishida-Kitagawa, N., Takeya, T. and Yogo, K. (2007) [Functional analysis of newly identified c-Src-binding proteins in osteoclastogenesis]. Nippon Rinsho 65 Suppl 9, 85-89.
( 2007/11/01 )

Yamada-Onodera, K., Kojima, K., Takase, Y. and Tani, Y. (2007) Cloning, sequence analysis, and expression in Escherichia coli of gene encoding N-Benzyl-3-pyrrolidinol dehydrogenase from Geotrichum capitatum. J Biosci Bioeng 104, 379-384.
( 2007/11/01 )

Yamada-Onodera, K., Takase, Y. and Tani, Y. (2007) Purification and characterization of 2-aminoacetophenone reductase of newly isolated Burkholderia sp.YT. J Biosci Bioeng 104, 416-419.
( 2007/11/01 )

Yoshida, N., Akazawa, S., Karino, T., Ishida, H., Hata, Y., Katsuragi, T., Tani, Y. and Takagi, H. (2007) Functional analysis of genes encoding putative oxidoreductases in Aspergillus oryzae, which are similar to fungal fructosyl-amino acid oxidase. J Biosci Bioeng 104, 424-427.
( 2007/11/01 )

2007年10月

Reza, H. M., Takahashi, Y. and Yasuda, K. (2007) Stage-dependent expression of Pax6 in optic vesicle/cup regulates patterning genes through signaling molecules. Differentiation 75, 726-736.
( 2007/10/01 )

Kimata, Y., Ishiwata-Kimata, Y., Ito, T., Hirata, A., Suzuki, T., Oikawa, D., Takeuchi, M. and Kohno, K. (2007) Two regulatory steps of ER-stress sensor Ire1 involving its cluster formation and interaction with unfolded proteins. J Cell Biol 179, 75-86.
( 2007/10/01 )

Takahara, K., Akashi, K. and Yokota, A. (2007) Continuous spectrophotometric assays for three regulatory enzymes of the arginine biosynthetic pathway. Anal Biochem 368, 138-147.
( 2007/10/01 )

Harashima, H., Kato, K., Shinmyo, A. and Sekine, M. (2007) Auxin is required for the assembly of A-type cyclin-dependent kinase complexes in tobacco cell suspension culture. J Plant Physiol 164, 1103-1112.
( 2007/10/01 )

Ishida, T. and Hashimoto, T. (2007) An Arabidopsis thaliana tubulin mutant with conditional root-skewing phenotype. J Plant Res 120, 635-640.
( 2007/10/01 )

Hirayama, J., Maeda, S. and Ishii, S. (2007) Markov and Semi-Markov switching of source appearances for nonstationary independent component analysis. IEEE Trans Neural Netw 18, 1326-1342.
( 2007/10/01 )

Kato, K., Marui, T., Kasai, S. and Shinmyo, A. (2007) Artificial control of transgene expression in Chlamydomonas reinhardtii chloroplast using the lac regulation system from Escherichia coli. J Biosci Bioeng 104, 207-213.
( 2007/10/01 )

Mori, T., Kitano, K., Terawaki, S., Maesaki, R. and Hakoshima, T. (2007) Crystallographic characterization of the radixin FERM domain bound to the cytoplasmic tail of adhesion molecule CD44. Acta Crystallogr Sect F Struct Biol Cryst Commun 63, 844-847.
( 2007/10/01 )

Qadota, H., Inoue, M., Hikita, T., Koppen, M., Hardin, J. D., Amano, M., Moerman, D. G. and Kaibuchi, K. (2007) Establishment of a tissue-specific RNAi system in C. elegans. Gene 400, 166-173.
( 2007/10/01 )

Han, S. I., Aramata, S., Yasuda, K. and Kataoka, K. (2007) MafA stability in pancreatic beta cells is regulated by glucose and is dependent on its constitutive phosphorylation at multiple sites by glycogen synthase kinase 3. Mol Cell Biol 27, 6593-6605.
( 2007/10/01 )

Kobayashi, K. (2007) Gradual activation of the response regulator DegU controls serial expression of genes for flagellum formation and biofilm formation in Bacillus subtilis. Mol Microbiol 66, 395-409.
( 2007/10/01 )

Ohhata, N., Yoshida, N., Egami, H., Katsuragi, T., Tani, Y. and Takagi, H. (2007) An extremely oligotrophic bacterium, Rhodococcus erythropolis N9T-4, isolated from crude oil. J Bacteriol 189, 6824-6831.
( 2007/10/01 )

Reza, H. M., Nishi, H., Kataoka, K., Takahashi, Y. and Yasuda, K. (2007) L-Maf regulates p27kip1 expression during chick lens fiber differentiation. Differentiation 75, 737-744.
( 2007/10/01 )

2007年08月

Ishikawa, S., Ogura, Y., Yoshimura, M., Okumura, H., Cho, E., Kawai, Y., Kurokawa, K., Oshima, T. and Ogasawara, N. (2007) Distribution of stable DnaA-binding sites on the Bacillus subtilis genome detected using a modified ChIP-chip method. DNA Res 14, 155-168.
( 2007/08/01 )

Kurokawa, K., Itoh, T., Kuwahara, T., Oshima, K., Toh, H., Toyoda, A., Takami, H., Morita, H., Sharma, V. K., Srivastava, T. P., Taylor, T. D., Noguchi, H., Mori, H., Ogura, Y., Ehrlich, D. S., Itoh, K., Takagi, T., Sakaki, Y., Hayashi, T. and Hattori, M. (2007) Comparative metagenomics revealed commonly enriched gene sets in human gut microbiomes. DNA Res 14, 169-181.
( 2007/08/01 )

Matsuo, Y., Oshima, T., Loh, P. C., Morimoto, T. and Ogasawara, N. (2007) Isolation and characterization of a dominant negative mutant of Bacillus subtilis GTP-binding protein, YlqF, essential for biogenesis and maintenance of the 50 S ribosomal subunit. J Biol Chem 282, 25270-25277.
( 2007/08/01 )

Akimoto, K., Katakami, H., Kim, H. J., Ogawa, E., Sano, C. M., Wada, Y. and Sano, H. (2007) Epigenetic inheritance in rice plants. Ann Bot 100, 205-217.
( 2007/08/01 )

Nakamura, Y., Mori, T., Sato, M. A. and Ishii, S. (2007) Reinforcement learning for a biped robot based on a CPG-actor-critic method. Neural Netw 20, 723-735.
( 2007/08/01 )

Saito, Y., Ashida, H., Kojima, C., Tamura, H., Matsumura, H., Kai, Y. and Yokota, A. (2007) Enzymatic characterization of 5-methylthioribose 1-phosphate isomerase from Bacillus subtilis. Biosci Biotechnol Biochem 71, 2021-2028.
( 2007/08/01 )

Kawabata, T. and Go, N. (2007) Detection of pockets on protein surfaces using small and large probe spheres to find putative ligand binding sites. Proteins 68, 516-529.
( 2007/08/01 )

Inagaki, N., Toriyama, M. and Shimada, T. (2007) [Neuronal polarity formation and feedback loop of shootin1]. Seikagaku 79, 799-802.
( 2007/08/01 )

Loh, P. C., Morimoto, T., Matsuo, Y., Oshima, T. and Ogasawara, N. (2007) The GTP-binding protein YqeH participates in biogenesis of the 30S ribosome subunit in Bacillus subtilis. Genes Genet Syst 82, 281-289.
( 2007/08/01 )

Yanagihara, F., Yoshida, S., Sugaya, Y. and Maki, H. (2007) The dnaE173 mutator mutation confers on the alpha subunit of Escherichia coli DNA polymerase III a capacity for highly processive DNA synthesis and stable binding to primer/template DNA. Genes Genet Syst 82, 273-280.
( 2007/08/01 )

2007年07月

Mori, T., Wada, T., Suzuki, T., Kubota, Y. and Inagaki, N. (2007) Singar1, a novel RUN domain-containing protein, suppresses formation of surplus axons for neuronal polarity. J Biol Chem 282, 19884-19893.
( 2007/07/01 )

Terawaki, S., Kitano, K. and Hakoshima, T. (2007) Structural basis for type II membrane protein binding by ERM proteins revealed by the radixin-neutral endopeptidase 24.11 (NEP) complex. J Biol Chem 282, 19854-19862.
( 2007/07/01 )

Yoshimura, M., Oshima, T. and Ogasawara, N. (2007) Involvement of the YneS/YgiH and PlsX proteins in phospholipid biosynthesis in both Bacillus subtilis and Escherichia coli. BMC Microbiol 7, 69.
( 2007/07/01 )

Hirota, A., Kato, T., Fukaki, H., Aida, M. and Tasaka, M. (2007) The auxin-regulated AP2/EREBP gene PUCHI is required for morphogenesis in the early lateral root primordium of Arabidopsis. Plant Cell 19, 2156-2168.
( 2007/07/01 )

Kimura, Y., Saito, M., Kimata, Y. and Kohno, K. (2007) Transgenic mice expressing a fully nontoxic diphtheria toxin mutant, not CRM197 mutant, acquire immune tolerance against diphtheria toxin. J Biochem 142, 105-112.
( 2007/07/01 )

Kobayashi, K. (2007) Bacillus subtilis pellicle formation proceeds through genetically defined morphological changes. J Bacteriol 189, 4920-4931.
( 2007/07/01 )

Lee, M. H. and Sano, H. (2007) Attenuation of the hypersensitive response by an ATPase associated with various cellular activities (AAA) protein through suppression of a small GTPase, ADP ribosylation factor, in tobacco plants. Plant J 51, 127-139.
( 2007/07/01 )

Gong, X., Nakamura, K., Yu, H., Yura, K. and Go, N. (2007) BAAQ: an infrastructure for application integration and knowledge discovery in bioinformatics. IEEE Trans Inf Technol Biomed 11, 428-434.
( 2007/07/01 )

2007年06月

2007年05月

Ishida, T., Kaneko, Y., Iwano, M. and Hashimoto, T. (2007) Helical microtubule arrays in a collection of twisting tubulin mutants of Arabidopsis thaliana. Proc Natl Acad Sci U S A 104, 8544-8549.
( 2007/05/01 )

Sato, Y., Kasai, T., Nakagawa, S., Tanabe, K., Watanabe, T., Kawakami, K. and Takahashi, Y. (2007) Stable integration and conditional expression of electroporated transgenes in chicken embryos. Dev Biol 305, 616-624.
( 2007/05/01 )

Watanabe, T., Saito, D., Tanabe, K., Suetsugu, R., Nakaya, Y., Nakagawa, S. and Takahashi, Y. (2007) Tet-on inducible system combined with in ovo electroporation dissects multiple roles of genes in somitogenesis of chicken embryos. Dev Biol 305, 625-636.
( 2007/05/01 )

Tamaki, S., Matsuo, S., Wong, H. L., Yokoi, S. and Shimamoto, K. (2007) Hd3a protein is a mobile flowering signal in rice. Science 316, 1033-1036.
( 2007/05/01 )

Choi, C. S. and Sano, H. (2007) Abiotic-stress induces demethylation and transcriptional activation of a gene encoding a glycerophosphodiesterase-like protein in tobacco plants. Mol Genet Genomics 277, 589-600.
( 2007/05/01 )

Iwano, M., Shiba, H., Matoba, K., Miwa, T., Funato, M., Entani, T., Nakayama, P., Shimosato, H., Takaoka, A., Isogai, A. and Takayama, S. (2007) Actin dynamics in papilla cells of Brassica rapa during self- and cross-pollination. Plant Physiol 144, 72-81.
( 2007/05/01 )

Kim, H. J., Yano, A., Wada, Y. and Sano, H. (2007) Properties of a tobacco DNA methyltransferase, NtMET1 and its involvement in chromatin movement during cell division. Ann Bot 99, 845-856.
( 2007/05/01 )

Kodama, Y. and Sano, H. (2007) Functional diversification of a basic helix-loop-helix protein due to alternative transcription during generation of amphidiploidy in tobacco plants. Biochem J 403, 493-499.
( 2007/05/01 )

Oikawa, D., Kimata, Y. and Kohno, K. (2007) Self-association and BiP dissociation are not sufficient for activation of the ER stress sensor Ire1. J Cell Sci 120, 1681-1688.
( 2007/05/01 )

Yamada-Onodera, K., Norimoto, A., Kawada, N., Furuya, R., Yamamoto, H. and Tani, Y. (2007) Production of optically active 1,2,4-butanetriol from corresponding racemate by Microbial stereoinversion. J Biosci Bioeng 103, 494-496.
( 2007/05/01 )

2007年04月

2007年03月

2007年02月

2007年01月

Takai, Y., Kitano, K., Terawaki, S., Maesaki, R. and Hakoshima, T. (2007) Crystallographic characterization of the radixin FERM domain bound to the cytoplasmic tails of adhesion molecules CD43 and PSGL-1. Acta Crystallogr Sect F Struct Biol Cryst Commun 63, 49-51.
( 2007/01/01 )

Reza, H. M., Urano, A., Shimada, N. and Yasuda, K. (2007) Sequential and combinatorial roles of maf family genes define proper lens development. Mol Vis 13, 18-30.
( 2007/01/01 )

Kitano, K., Yoshihara, N. and Hakoshima, T. (2007) Crystal structure of the HRDC domain of human Werner syndrome protein, WRN. J Biol Chem 282, 2717-2728.
( 2007/01/01 )

Mishima, M., Wakabayashi, S. and Kojima, C. (2007) Solution structure of the cytoplasmic region of Na+/H+ exchanger 1 complexed with essential cofactor calcineurin B homologous protein 1. J Biol Chem 282, 2741-2751.
( 2007/01/01 )

Ide, S., Watanabe, K., Watanabe, H., Shirahige, K., Kobayashi, T. and Maki, H. (2007) Abnormality in initiation program of DNA replication is monitored by the highly repetitive rRNA gene array on chromosome XII in budding yeast. Mol Cell Biol 27, 568-578.
( 2007/01/01 )

Ishida, T., Thitamadee, S. and Hashimoto, T. (2007) Twisted growth and organization of cortical microtubules. J Plant Res 120, 61-70.
( 2007/01/01 )

Okushima, Y., Fukaki, H., Onoda, M., Theologis, A. and Tasaka, M. (2007) ARF7 and ARF19 regulate lateral root formation via direct activation of LBD/ASL genes in Arabidopsis. Plant Cell 19, 118-130.
( 2007/01/01 )

Shimosato, H., Yokota, N., Shiba, H., Iwano, M., Entani, T., Che, F. S., Watanabe, M., Isogai, A. and Takayama, S. (2007) Characterization of the SP11/SCR high-affinity binding site involved in self/nonself recognition in brassica self-incompatibility. Plant Cell 19, 107-117.
( 2007/01/01 )