研究業績の紹介

研究業績の紹介

2018年12月

Perez de Souza L, Scossa F, Proost S, Bitocchi E, Papa R, Tohge T, Fernie AR.(2018) Multi-tissue integration of transcriptomic and specialized metabolite profiling provides tools for assessing the common bean (Phaseolus vulgaris) metabolome. Plant J. 2018 Nov 27. doi: 10.1111/tpj.14178. [Epub ahead of print]
( 2018/12/10 )

Shoji T, Hashimoto T.(2018) Expression of a tobacco nicotine biosynthesis gene depends on the JRE4 transcription factor in heterogenous tomato. J Plant Res. 2018 Nov 27. doi: 10.1007/s10265-018-1075-0. [Epub ahead of print]
( 2018/12/10 )

Saelim L, Akiyoshi N, Tan TT, Ihara A, Yamaguchi M, Hirano K, Matsuoka M, Demura T, Ohtani M.(2018) Arabidopsis Group IIId ERF proteins positively regulate primary cell wall-type CESA genes. J Plant Res. 2018 Nov 26. doi: 10.1007/s10265-018-1074-1. [Epub ahead of print]
( 2018/12/10 )

Goh T.(2018) Long-term live-cell imaging approaches to study lateral root formation in Arabidopsis thaliana. Microscopy (Oxf). 2018 Nov 23. doi: 10.1093/jmicro/dfy135. [Epub ahead of print]
( 2018/12/07 )

Watcharawipas A, Watanabe D, Takagi H.(2018) Sodium Acetate Responses in Saccharomyces cerevisiae and the Ubiquitin Ligase Rsp5. Front Microbiol. 2018 Oct 16;9:2495. doi: 10.3389/fmicb.2018.02495. eCollection 2018.
( 2018/12/07 )

Kusakizako T, Claxton DP, Tanaka Y, Maturana AD, Kuroda T, Ishitani R, Mchaourab HS, Nureki O.(2018) Structural Basis of H+-Dependent Conformational Change in a Bacterial MATE Transporter. Structure. 2018 Oct 30. pii: S0969-2126(18)30365-4. doi: 10.1016/j.str.2018.10.004. [Epub ahead of print]
( 2018/12/07 )

Wang Q, Li Y, Ishikawa K, Kosami KI, Uno K, Nagawa S, Tan L, Du J, Shimamoto K, Kawano Y.(2018) Resistance protein Pit interacts with the GEF OsSPK1 to activate OsRac1 and trigger rice immunity. Proc Natl Acad Sci U S A. 2018 Dec 4;115(49):E11551-E11560. doi: 10.1073/pnas.1813058115. Epub 2018 Nov 16.
( 2018/12/07 )

Nishikawa M, Yuri S, Kimura H, Yanagawa N, Hamon M, Hauser P, Zhao L, Jo OD, Yanagawa N.(2018) Comprehensive analysis of chromatin signature and transcriptome uncovers functional lncRNAs expressed in nephron progenitor cells. Biochim Biophys Acta Gene Regul Mech. 2018 Sep 14;1862(1):58-70. doi: 10.1016/j.bbagrm.2018.09.006. [Epub ahead of print]
( 2018/12/06 )

Shimizu T, Teramoto H, Inui M.(2018) Introduction of the glyoxylate bypass increases hydrogen gas yield from acetate and l-glutamate in Rhodobacter sphaeroides. Appl Environ Microbiol. 2018 Nov 9. pii: AEM.01873-18. doi: 10.1128/AEM.01873-18. [Epub ahead of print]
( 2018/12/06 )

Chin DP, Shiratori I, Shimizu A, Kato K, Mii M, Waga I.(2018) Generation of brilliant green fluorescent petunia plants by using a new and potent fluorescent protein transgene. Sci Rep. 2018 Nov 8;8(1):16556. doi: 10.1038/s41598-018-34837-2.
( 2018/12/06 )

Matsui T.(2018) Editorial: Cell Adhesion and Migration in the Development of Multicellular Organisms. Front Cell Dev Biol. 2018 Oct 22;6:142. doi: 10.3389/fcell.2018.00142. eCollection 2018.
( 2018/12/05 )

Iwabuchi K, Ohnishi H, Tamura K, Fukao Y, Furuya T, Hattori K, Tsukaya H, Hara-Nishimura I.(2018) ANGUSTIFOLIA Regulates Actin Filament Alignment for Nuclear Positioning in Leaves. Plant Physiol. 2018 Nov 7. pii: pp.01150.2018. doi: 10.1104/pp.18.01150. [Epub ahead of print]
( 2018/12/05 )

Ohtani M, Demura T.(2018) The quest for transcriptional hubs of lignin biosynthesis: beyond the NAC-MYB-gene regulatory network model. Curr Opin Biotechnol. 2018 Oct 26;56:82-87. doi: 10.1016/j.copbio.2018.10.002. [Epub ahead of print]
( 2018/12/05 )

2018年11月

Abou-Saleh RH, Hernandez-Gomez MC, Amsbury S, Paniagua C, Bourdon M, Miyashima S, Helariutta Y, Fuller M, Budtova T, Connell SD, Ries ME, Benitez-Alfonso Y.(2018) Interactions between callose and cellulose revealed through the analysis of biopolymer mixtures. Nat Commun. 2018 Oct 31;9(1):4538. doi: 10.1038/s41467-018-06820-y.
( 2018/11/19 )

Hashimoto O, Funaba M, Sekiyama K, Doi S, Shindo D, Satoh R, Itoi H, Oiwa H, Morita M, Suzuki C, Sugiyama M, Yamakawa N, Takada H, Matsumura S, Inoue K, Oyadomari S, Sugino H, Kurisaki A.(2018) Activin E Controls Energy Homeostasis in Both Brown and White Adipose Tissues as a Hepatokine. Cell Rep. 2018 Oct 30;25(5):1193-1203. doi: 10.1016/j.celrep.2018.10.008.
( 2018/11/19 )

Naumann M, Hubberten HM, Watanabe M, Hänsch R, Schöttler MA, Hoefgen R.(2018) Sulfite Reductase Co-suppression in Tobacco Reveals Detoxification Mechanisms and Downstream Responses Comparable to Sulfate Starvation. Front Plant Sci. 2018 Oct 15;9:1423. doi: 10.3389/fpls.2018.01423. eCollection 2018.
( 2018/11/19 )

Nonoguchi Y, Tani A, Murayama T, Uchida H, Kawai T.(2018) Surfactant-driven Amphoteric Doping of Carbon Nanotubes. Chem Asian J. 2018 Oct 25. doi: 10.1002/asia.201801490. [Epub ahead of print]
( 2018/11/19 )

Kondo J, Ekawa T, Endo H, Yamazaki K, Tanaka N, Kukita Y, Okuyama H, Okami J, Imamura F, Ohue M, Kato K, Nomura T, Kohara A, Mori S, Dan S, Inoue M.(2018) High-Throughput Screening in Colorectal Cancer Tissue-Originated Spheroids. Cancer Sci. 2018 Oct 21. doi: 10.1111/cas.13843. [Epub ahead of print]
( 2018/11/19 )

Almagro G, Viale AM, Montero M, Muñoz FJ, Baroja-Fernández E, Mori H, Pozueta-Romero J.(2018) A cAMP/CRP-controlled mechanism for the incorporation of extracellular ADP-glucose in Escherichia coli involving NupC and NupG nucleoside transporters. Sci Rep. 2018 Oct 19;8(1):15509. doi: 10.1038/s41598-018-33647-w.
( 2018/11/19 )

Watanabe D, Kajihara T, Sugimoto Y, Takagi K, Mizuno M, Zhou Y, Chen J, Takeda K, Tatebe H, Shiozaki K, Nakazawa N, Izawa S, Akao T, Shimoi H, Maeda T, Takagi H.(2018) Nutrient Signaling via the TORC1-Greatwall-PP2AB55δ Pathway Responsible for the High Initial Rates of Alcoholic Fermentation in Sake Yeast Strains of Saccharomyces cerevisiae. Appl Environ Microbiol. 2018 Oct 19. pii: AEM.02083-18. doi: 10.1128/AEM.02083-18. [Epub ahead of print]
( 2018/11/19 )

Takenaka Y, Watanabe Y, Schuetz M, Unda F, Hill JL, Phookaew P, Yoneda A, Mansfield SD, Samuels AL, Ohtani M, Demura T.(2018) Patterned deposition of xylan and lignin is independent from the secondary wall cellulose of Arabidopsis xylem vessels. Plant Cell. 2018 Oct 18. pii: tpc.00292.2018. doi: 10.1105/tpc.18.00292. [Epub ahead of print]
( 2018/11/16 )

Minegishi T, Uesugi Y, Kaneko N, Yoshida W, Sawamoto K, Inagaki N.(2018) Shootin1b Mediates a Mechanical Clutch to Produce Force for Neuronal Migration. Cell Rep. 2018 Oct 16;25(3):624-639.e6. doi: 10.1016/j.celrep.2018.09.068.
( 2018/11/16 )

Miyazono KI, Ohno Y, Wada H, Ito T, Fukatsu Y, Kurisaki A, Asashima M, Tanokura M.(2018) Structural basis for receptor-regulated SMAD recognition by MAN1. Nucleic Acids Res. 2018 Oct 13. doi: 10.1093/nar/gky925. [Epub ahead of print]
( 2018/11/16 )

Tran DM, Takagi H, Kimata Y.(2018) Categorization of endoplasmic reticulum stress as accumulation of unfolded proteins or membrane lipid aberrancy using yeast Ire1 mutants. Biosci Biotechnol Biochem. 2018 Oct 13:1-4. doi: 10.1080/09168451.2018.1530098. [Epub ahead of print]
( 2018/11/16 )

Haruyama T, Sugano Y, Kodera N, Uchihashi T, Ando T, Tanaka Y, Konno H, Tsukazaki T.(2018) Single-Unit Imaging of Membrane Protein-Embedded Nanodiscs from Two Oriented Sides by High-Speed Atomic Force Microscopy. Structure. 2018 Oct 4. pii: S0969-2126(18)30331-9. doi: 10.1016/j.str.2018.09.005. [Epub ahead of print]
( 2018/11/16 )

Fujimoto T, Nakamura O, Saito M, Tsuru A, Matsumoto M, Kohno K, Inaba K, Kadokura H.(2018) Identification of the physiological substrates of PDIp, a pancreas-specific protein disulfide isomerase family member. J Biol Chem. 2018 Oct 12. pii: jbc.RA118.003694. doi: 10.1074/jbc.RA118.003694. [Epub ahead of print]
( 2018/11/16 )

2018年10月

Tanaka Y, Izumioka A, Abdul Hamid A, Fujii A, Haruyama T, Furukawa A, Tsukazaki T.(2018) 2.8-Å crystal structure of Escherichia coli YidC revealing all core regions, including flexible C2 loop. Biochem Biophys Res Commun. 2018 Sep 18. pii: S0006-291X(18)31961-2. doi: 10.1016/j.bbrc.2018.09.043. [Epub ahead of print]
( 2018/10/03 )

Watanabe M, Netzer F, Tohge T, Orf I, Brotman Y, Dubbert D, Fernie AR, Rennenberg H, Hoefgen R, Herschbach C.(2018) Metabolome and Lipidome Profiles of Populus × canescens Twig Tissues During Annual Growth Show Phospholipid-Linked Storage and Mobilization of C, N, and S. Front Plant Sci. 2018 Sep 5;9:1292. doi: 10.3389/fpls.2018.01292. eCollection 2018.
( 2018/10/03 )

Tsuge Y, Kato N, Yamamoto S, Suda M, Inui M.(2018) Enhanced production of d-lactate from mixed sugars in Corynebacterium glutamicum by overexpression of glycolytic genes encoding phosphofructokinase and triosephosphate isomerase. J Biosci Bioeng. 2018 Sep 6. pii: S1389-1723(18)30160-9. doi: 10.1016/j.jbiosc.2018.08.002. [Epub ahead of print]
( 2018/10/03 )

Takatsuka H, Higaki T, Umeda M.(2018) Actin reorganization triggers rapid cell elongation in roots. Plant Physiol. 2018 Sep 5. pii: pp.00557.2018. doi: 10.1104/pp.18.00557. [Epub ahead of print]
( 2018/10/03 )

Shimoi H, Hanazumi Y, Kawamura N, Yamada M, Shimizu S, Suzuki T, Watanabe D, Akao T.(2018) Meiotic chromosomal recombination defect in sake yeasts. J Biosci Bioeng. 2018 Sep 1. pii: S1389-1723(18)30515-2. doi: 10.1016/j.jbiosc.2018.07.027. [Epub ahead of print]
( 2018/10/03 )

2018年09月

Chumsakul O, Nakamura K, Ishikawa S, Oshima T.(2018) GeF-seq: A Simple Procedure for Base Pair Resolution ChIP-seq. 2018;1837:33-47. doi: 10.1007/978-1-4939-8675-0_3.
( 2018/09/05 )

Kogure T, Inui M.(2018) Recent advances in metabolic engineering of Corynebacterium glutamicum for bioproduction of value-added aromatic chemicals and natural products. 2018 Aug 14. doi: 10.1007/s00253-018-9289-6. [Epub ahead of print]
( 2018/09/05 )

Toju H, Peay KG, Yamamichi M, Narisawa K, Hiruma K, Naito K, Fukuda S, Ushio M, Nakaoka S, Onoda Y, Yoshida K, Schlaeppi K, Bai Y, Sugiura R, Ichihashi Y, Minamisawa K, Kiers ET.(2018) Publisher Correction: Core microbiomes for sustainable agroecosystems. 2018 Aug 14. doi: 10.1038/s41477-018-0245-3. [Epub ahead of print]
( 2018/09/05 )

Oura S, Miyata H, Noda T, Shimada K, Matsumura T, Morohoshi A, Isotani A, Ikawa M.(2018) Chimeric analysis with newly established EGFP/DsRed2-tagged ES cells identify HYDIN as essential for spermiogenesis in mice. 2018 Aug 9. doi: 10.1538/expanim.18-0071. [Epub ahead of print]
( 2018/09/05 )

Takenaka Y, Kato K, Ogawa-Ohnishi M, Tsuruhama K, Kajiura H, Yagyu K, Takeda A, Takeda Y, Kunieda T, Hara-Nishimura I, Kuroha T, Nishitani K, Matsubayashi Y, Ishimizu T.(2018) Pectin RG-I rhamnosyltransferases represent a novel plant-specific glycosyltransferase family. 2018 Aug 6. doi: 10.1038/s41477-018-0217-7. [Epub ahead of print]
( 2018/09/05 )

Baba K, Yoshida W, Toriyama M, Shimada T, Manning CF, Saito M, Kohno K, Trimmer JS, Watanabe R, Inagaki N.(2018) Gradient-reading and mechano-effector machinery for netrin-1-induced axon guidance. 2018 Aug 7;7. pii: e34593. doi: 10.7554/eLife.34593.
( 2018/09/05 )

2018年08月

Nakano T, Tanaka S, Ohtani M, Yamagami A, Takeno S, Hara N, Mori A, Nakano A, Hirose S, Himuro Y, Kobayashi M, Kushiro T, Demura T, Asami T, Osada H, Shinozaki K.(2018) FPX is a Novel Chemical Inducer That Promotes Callus Formation and Shoot Regeneration in Plants. Plant Cell Physiol. 2018 Jul 20. doi: 10.1093/pcp/pcy139. [Epub ahead of print]
( 2018/08/10 )

Inoue H, Kunida K, Matsuda N, Hoshino D, Wada T, Imamura H, Noji H, Kuroda S.(2018) Automatic quantitative segmentation of myotubes reveals single-cell dynamics of S6 kinase activation. Cell Struct Funct. 2018 Jul 26. doi: 10.1247/csf.18012. [Epub ahead of print]
( 2018/08/10 )

Xu Y, Gan ES, Ito T.(2018) In Situ Proximity Ligation Assay to Detect the Interaction Between Plant Transcription Factors and Other Regulatory Proteins. Methods Mol Biol. 2018;1830:325-335. doi: 10.1007/978-1-4939-8657-6_19.
( 2018/08/10 )

Nishizawa-Yokoi A, Yamaguchi N.(2018) Gene Expression and Transcription Factor Binding Tests Using Mutated-Promoter Reporter Lines. Methods Mol Biol. 2018;1830:291-305. doi: 10.1007/978-1-4939-8657-6_17.
( 2018/08/10 )

Uemoto K, Araki T, Endo M.(2018) Isolation of Arabidopsis Palisade and Spongy Mesophyll Cells. Methods Mol Biol. 2018;1830:141-148. doi: 10.1007/978-1-4939-8657-6_9.
( 2018/08/10 )

Lee ZH, Yamaguchi N, Ito T.(2018) Using CRISPR/Cas9 System to Introduce Targeted Mutation in Arabidopsis. Methods Mol Biol. 2018;1830:93-108. doi: 10.1007/978-1-4939-8657-6_6.
( 2018/08/10 )

Tabara M, Ohtani M, Kanekatsu M, Moriyama H, Fukuhara T.(2018) Size distribution of small interfering RNAs in various organs at different developmental stages is primarily determined by the dicing activity of Dicer-like proteins in plants. Plant Cell Physiol. 2018 Jul 19. doi: 10.1093/pcp/pcy144. [Epub ahead of print]
( 2018/08/10 )

Numata K, Horii Y, Oikawa K, Miyagi Y, Demura T, Ohtani M.(2018) Library screening of cell-penetrating peptide for BY-2 cells, leaves of Arabidopsis, tobacco, tomato, poplar, and rice callus. Sci Rep. 2018 Jul 20;8(1):10966. doi: 10.1038/s41598-018-29298-6.
( 2018/08/10 )

Wong HL, Akamatsu A, Wang Q, Higuchi M, Matsuda T, Okuda J, Kosami K, Inada N, Kawasaki T, Kaneko-Kawano T, Nagawa S, Tan L, Kawano Y, Shimamoto K.(2018) In vivo monitoring of plant small GTPase activation using a Förster resonance energy transfer biosensor. Plant Methods. 2018 Jul 7;14:56. doi: 10.1186/s13007-018-0325-4. eCollection 2018.
( 2018/08/10 )

2018年07月

Le MNT, Takahi M, Maruyama K, Kurisaki A, Ohnuma K.(2018) Cardiac differentiation at an initial low density of human-induced pluripotent stem cells. In Vitro Cell Dev Biol Anim. 2018 Jul 2. doi: 10.1007/s11626-018-0276-0. [Epub ahead of print]
( 2018/07/11 )

Wakatake T, Yoshida S, Shirasu K.(2018) Induced cell fate transitions at multiple cell layers configure haustorium development in parasitic plants. Development. 2018 Jun 27. pii: dev.164848. doi: 10.1242/dev.164848. [Epub ahead of print]
( 2018/07/11 )

Kimata S, Mochizuki D, Satoh J, Kitano K, Kanesaki Y, Takeda K, Abe A, Kawasaki S, Niimura Y.(2018) Intracellular free flavin and its associated enzymes participate in oxygen and iron metabolism in Amphibacillus xylanus lacking a respiratory chain. FEBS Open Bio. 2018 May 9;8(6):947-961. doi: 10.1002/2211-5463.12425. eCollection 2018 Jun.
( 2018/07/11 )

Oomuro M, Watanabe D, Sugimoto Y, Kato T, Motoyama Y, Watanabe T, Takagi H.(2018) Accumulation of intracellular S-adenosylmethionine increases the fermentation rate of bottom-fermenting brewer's yeast during high-gravity brewing. J Biosci Bioeng. 2018 Jun 16. pii: S1389-1723(18)30006-9. doi: 10.1016/j.jbiosc.2018.05.027. [Epub ahead of print]
( 2018/07/11 )

Okimura C, Sakumura Y, Shimabukuro K, Iwadate Y.(2018) Sensing of substratum rigidity and directional migration by fast-crawling cells. Phys Rev E. 2018 May;97(5-1):052401. doi: 10.1103/PhysRevE.97.052401.
( 2018/07/11 )

Shirakawa M, Hara-Nishimura I.(2018) Specialized Vacuoles of Myrosin Cells: Chemical Defense Strategy in Brassicales Plants. Plant Cell Physiol. 2018 Jul 1;59(7):1309-1316. doi: 10.1093/pcp/pcy082.
( 2018/07/11 )

Hayashi S, Nakahata Y, Kohno K, Matsui T, Bessho Y.(2018) Presomitic mesoderm-specific expression of the transcriptional repressor Hes7 is controlled by E-box, T-box, and Notch signaling pathway. J Biol Chem. 2018 Jun 12. pii: jbc.RA118.003728. doi: 10.1074/jbc.RA118.003728. [Epub ahead of print]
( 2018/07/11 )

Watanabe M, Tohge T, Fernie AR, Hoefgen R.(2018) The Effect of Single and Multiple SERAT Mutants on Serine and Sulfur Metabolism. Front Plant Sci. 2018 May 28;9:702. doi: 10.3389/fpls.2018.00702. eCollection 2018.
( 2018/07/11 )

Watanabe D, Kumano M, Sugimoto Y, Ito M, Ohashi M, Sunada K, Takahashi T, Yamada T, Takagi H.(2018) Metabolic switching of sake yeast by kimoto lactic acid bacteria through the [GAR+] non-genetic element. J Biosci Bioeng. 2018 May 31. pii: S1389-1723(18)30166-X. doi: 10.1016/j.jbiosc.2018.05.011. [Epub ahead of print]
( 2018/07/11 )

Murao N, Matsubara S, Matsuda T, Noguchi H, Mutoh T, Mutoh M, Koseki H, Namihira M, Nakashima K.(2018) Np95/Uhrf1 regulates tumor suppressor gene expression of neural stem/precursor cells, contributing to neurogenesis in the adult mouse brain. Neurosci Res. 2018 May 31. pii: S0168-0102(18)30276-1. doi: 10.1016/j.neures.2018.05.007. [Epub ahead of print]
( 2018/07/11 )

2018年06月

Takpho N, Watanabe D, Takagi H.(2018) Valine biosynthesis in Saccharomyces cerevisiae is regulated by the mitochondrial branched-chain amino acid aminotransferase Bat1. Microb Cell. 2018 Mar 21;5(6):293-299. doi: 10.15698/mic2018.06.637.
( 2018/06/22 )

Mai TC, Munakata T, Tran DM, Takagi H, Kimata Y.(2018) A chimeric mutant analysis in yeast cells suggests BiP independent regulation of the mammalian endoplasmic reticulum-stress sensor IRE1α. Biosci Biotechnol Biochem. 2018 May 28:1-4. doi: 10.1080/09168451.2018.1478716. [Epub ahead of print]
( 2018/06/22 )

Fukuda T, Shiozaki K.(2018) The Rag GTPase-Ragulator complex attenuates TOR complex 1 signaling in fission yeast. Autophagy. 2018 May 25:1-2. doi: 10.1080/15548627.2018.1444313. [Epub ahead of print]
( 2018/06/22 )

Astuti RI, Nasuno R, Takagi H.(2018) Nitric Oxide Signalling in Yeast. Adv Microb Physiol. 2018;72:29-63. doi: 10.1016/bs.ampbs.2018.01.003. Epub 2018 Mar 2.
( 2018/06/22 )

Suzuki M, Shinozuka N, Hirakata T, Nakata MT, Demura T, Tsukaya H, Horiguchi G.(2018) OLIGOCELLULA1/HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES15 Promotes Cell Proliferation With HISTONE DEACETYLASE9 and POWERDRESS During Leaf Development in Arabidopsis thaliana. Front Plant Sci. 2018 May 3;9:580. doi: 10.3389/fpls.2018.00580. eCollection 2018.
( 2018/06/22 )

Guo S, Dai S, Singh PK, Wang H, Wang Y, Tan JLH, Wee W, Ito T.(2018) A Membrane-Bound NAC-Like Transcription Factor OsNTL5 Represses the Flowering in Oryza sativa. Front Plant Sci. 2018 May 3;9:555. doi: 10.3389/fpls.2018.00555. eCollection 2018.
( 2018/06/22 )

Ishimatsu K, Hiscock TW, Collins ZM, Sari DWK, Lischer K, Richmond DL, Bessho Y, Matsui T, Megason SG.(2018) Size-reduced embryos reveal a gradient scaling-based mechanism for zebrafish somite formation. Development. 2018 Jun 11;145(11). pii: dev161257. doi: 10.1242/dev.161257.
( 2018/06/22 )

Ikawati M, Kawaichi M, Oka C.(2018) Loss of HtrA1 serine protease induces synthetic modulation of aortic vascular smooth muscle cells. PLoS One. 2018 May 16;13(5):e0196628. doi: 10.1371/journal.pone.0196628. eCollection 2018.
( 2018/06/22 )

Xu Y, Prunet N, Gan ES, Wang Y, Stewart D, Wellmer F, Huang J, Yamaguchi N, Tatsumi Y, Kojima M, Kiba T, Sakakibara H, Jack TP, Meyerowitz EM, Ito T.(2018) SUPERMAN regulates floral whorl boundaries through control of auxin biosynthesis. EMBO J. 2018 Jun 1;37(11). pii: e97499. doi: 10.15252/embj.201797499. Epub 2018 May 15.
( 2018/06/22 )

Shimizu T, Watanabe M, Fernie AR, Tohge T.(2018) Targeted LC-MS Analysis for Plant Secondary Metabolites. Methods Mol Biol. 2018;1778:171-181. doi: 10.1007/978-1-4939-7819-9_12.
( 2018/06/22 )

Perez de Souza L, Fernie AR, Tohge T.(2018) Carbon Atomic Survey for Identification of Selected Metabolic Fluxes. Methods Mol Biol. 2018;1778:59-67. doi: 10.1007/978-1-4939-7819-9_5.
( 2018/06/22 )

Hiruma K, Kobae Y, Toju H.(2018) Beneficial associations between Brassicaceae plants and fungal endophytes under nutrient-limiting conditions: evolutionary origins and host-symbiont molecular mechanisms. Curr Opin Plant Biol. 2018 May 5;44:145-154. doi: 10.1016/j.pbi.2018.04.009. [Epub ahead of print]
( 2018/06/22 )

Zellner A, Scharrer E, Arzberger T, Oka C, Domenga-Denier V, Joutel A, Lichtenthaler SF, Müller SA, Dichgans M, Haffner C.(2018) CADASIL brain vessels show a HTRA1 loss-of-function profile. Acta Neuropathol. 2018 May 3. doi: 10.1007/s00401-018-1853-8. [Epub ahead of print]
( 2018/06/22 )

Toju H, Peay KG, Yamamichi M, Narisawa K, Hiruma K, Naito K, Fukuda S, Ushio M, Nakaoka S, Onoda Y, Yoshida K, Schlaeppi K, Bai Y, Sugiura R, Ichihashi Y, Minamisawa K, Kiers ET.(2018) Core microbiomes for sustainable agroecosystems. Nat Plants. 2018 May;4(5):247-257. doi: 10.1038/s41477-018-0139-4.
( 2018/06/22 )

Tsukazaki T.(2018) Structure-based working model of SecDF, a proton-driven bacterial protein translocation factor. FEMS Microbiol Lett. 2018 Jun 1;365(12). doi: 10.1093/femsle/fny112.
( 2018/06/22 )

Klose R, Adam MG, Weis EM, Moll I, Wüstehube-Lausch J, Tetzlaff F, Oka C, Ehrmann M, Fischer A.(2018) Inactivation of the serine protease HTRA1 inhibits tumor growth by deregulating angiogenesis. Oncogene. 2018 May 1. doi: 10.1038/s41388-018-0258-4. [Epub ahead of print]
( 2018/06/22 )

Iwata Y, Iida T, Matsunami T, Yamada Y, Mishiba KI, Ogawa T, Kurata T, Koizumi N.(2018) Constitutive BiP protein accumulation in Arabidopsis mutants defective in a gene encoding chloroplast-resident stearoyl-acyl carrier protein desaturase. Genes Cells. 2018 Jun;23(6):456-465. doi: 10.1111/gtc.12585. Epub 2018 Apr 24.
( 2018/06/22 )

Sueyoshi T, Kawasaki T, Kitai Y, Ori D, Akira S, Kawai T.(2018) Hu Antigen R Regulates Antiviral Innate Immune Responses through the Stabilization of mRNA for Polo-like Kinase 2. J Immunol. 2018 Jun 1;200(11):3814-3824. doi: 10.4049/jimmunol.1701282. Epub 2018 Apr 20.
( 2018/06/22 )

2018年05月

2018年04月

Tohge T, Borghi M, Fernie AR.(2018) The natural variance of the Arabidopsis floral secondary metabolites. Sci Data. 2018 Apr 3;5:180051. doi: 10.1038/sdata.2018.51.
( 2018/04/18 )

Miyazono KI, Moriwaki S, Ito T, Kurisaki A, Asashima M, Tanokura M.(2018) Hydrophobic patches on SMAD2 and SMAD3 determine selective binding to cofactors. Sci Signal. 2018 Mar 27;11(523). pii: eaao7227. doi: 10.1126/scisignal.aao7227.
( 2018/04/18 )

Nakayasu M, Shioya N, Shikata M, Thagun C, Abdelkareem A, Okabe Y, Ariizumi T, Arimura GI, Mizutani M, Ezura H, Hashimoto T, Shoji T.(2018) JRE4 is a master transcriptional regulator of defense-related steroidal glycoalkaloids in tomato. Plant J. 2018 Mar 23. doi: 10.1111/tpj.13911. [Epub ahead of print]
( 2018/04/18 )

Shimada T, Takagi J, Ichino T, Shirakawa M, Hara-Nishimura I.(2018) Plant Vacuoles. Annu Rev Plant Biol. 2018 Mar 21. doi: 10.1146/annurev-arplant-042817-040508. [Epub ahead of print]
( 2018/04/18 )

Maier L, Pruteanu M, Kuhn M, Zeller G, Telzerow A, Anderson EE, Brochado AR, Fernandez KC, Dose H, Mori H, Patil KR, Bork P, Typas A.(2018) Extensive impact of non-antibiotic drugs on human gut bacteria. Nature. 2018 Mar 29;555(7698):623-628. doi: 10.1038/nature25979. Epub 2018 Mar 19.
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Yamanishi A, Matsuba A, Kondo R, Akamatsu R, Tanaka S, Tokunaga M, Horie K, Kokubu C, Ishida Y, Takeda J.(2018) Collection of homozygous mutant mouse embryonic stem cells arising from autodiploidization during haploid gene trap mutagenesis. Nucleic Acids Res. 2018 Mar 15. doi: 10.1093/nar/gky183. [Epub ahead of print]
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Hirano Y, Amano Y, Yonemura S, Hakoshima T.(2018) The force-sensing device region of α-catenin is an intrinsically disordered segment in the absence of intramolecular stabilization of the autoinhibitory form. Genes Cells. 2018 Mar 15. doi: 10.1111/gtc.12578. [Epub ahead of print]
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Yamada T, Nishiyama M, Oba S, Jimbo HC, Ikeda K, Ishii S, Hong K, Sakumura Y.(2018) Computational Methods for Estimating Molecular System from Membrane Potential Recordings in Nerve Growth Cone. Sci Rep. 2018 Mar 14;8(1):4559. doi: 10.1038/s41598-018-22506-3.
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Murase M, Kawasaki T, Hakozaki R, Sueyoshi T, Putri DDP, Kitai Y, Sato S, Ikawa M, Kawai T.(2018) Intravesicular Acidification Regulates Lipopolysaccharide Inflammation and Tolerance through TLR4 Trafficking. J Immunol. 2018 Apr 15;200(8):2798-2808. doi: 10.4049/jimmunol.1701390. Epub 2018 Mar 14.
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Nakamura K, Hisanaga T, Fujimoto K, Nakajima K, Wada H.(2018) Plant-inspired pipettes. J R Soc Interface. 2018 Mar;15(140). pii: 20170868. doi: 10.1098/rsif.2017.0868.
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Nishimura T, Morone N, Suetsugu S.(2018) Membrane re-modelling by BAR domain superfamily proteins via molecular and non-molecular factors. Biochem Soc Trans. 2018 Mar 14. pii: BST20170322. doi: 10.1042/BST20170322. [Epub ahead of print]
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Maeda T, Tanaka Y, Inui M.(2018) Glutamine-rich toxic proteins GrtA, GrtB, and GrtC together with the antisense RNA AsgR constitute a toxin-antitoxin-like system in Corynebacterium glutamicum. Mol Microbiol. 2018 Mar 14. doi: 10.1111/mmi.13951. [Epub ahead of print]
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Durr J, Papareddy R, Nakajima K, Gutierrez-Marcos J.(2018) Highly efficient heritable targeted deletions of gene clusters and non-coding regulatory regions in Arabidopsis using CRISPR/Cas9. Sci Rep. 2018 Mar 13;8(1):4443. doi: 10.1038/s41598-018-22667-1.
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Sari DWK, Akiyama R, Naoki H, Ishijima H, Bessho Y, Matsui T.(2018) Time-lapse observation of stepwise regression of Erk activity in zebrafish presomitic mesoderm. Sci Rep. 2018 Mar 12;8(1):4335. doi: 10.1038/s41598-018-22619-9.
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Sasagawa Y, Danno H, Takada H, Ebisawa M, Tanaka K, Hayashi T, Kurisaki A, Nikaido I.(2018) Quartz-Seq2: a high-throughput single-cell RNA-sequencing method that effectively uses limited sequence reads. Genome Biol. 2018 Mar 9;19(1):29. doi: 10.1186/s13059-018-1407-3.
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Shinya T, Yasuda S, Hyodo K, Tani R, Hojo Y, Fujiwara Y, Hiruma K, Ishizaki T, Fujita Y, Saijo Y, Galis I.(2018) Integration of danger peptide signals with herbivore-associated molecular pattern signaling amplifies anti-herbivore defense responses in rice. Plant J. 2018 Mar 7. doi: 10.1111/tpj.13883. [Epub ahead of print]
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Tsuchiya Y, Saito M, Kadokura H, Miyazaki JI, Tashiro F, Imagawa Y, Iwawaki T, Kohno K.(2018) IRE1-XBP1 pathway regulates oxidative proinsulin folding in pancreatic β cells. J Cell Biol. 2018 Apr 2;217(4):1287-1301. doi: 10.1083/jcb.201707143. Epub 2018 Mar 5.
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2018年03月

Cui S, Wada S, Tobimatsu Y, Takeda Y, Saucet SB, Takano T, Umezawa T, Shirasu K, Yoshida S. (2018) Host lignin composition affects haustorium induction in the parasitic plants Phtheirospermum japonicum and Striga hermonthica. New Phytol. 2018 Mar 2. doi: 10.1111/nph.15033. [Epub ahead of print]
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Chen J, Van Gulden S, McGuire TL, Fleming AC, Oka C, Kessler JA, Peng CY.(2018) BMP-responsive Protease HtrA1 is Differentially Expressed in Astrocytes and Regulates Astrocytic Development and Injury Response. J Neurosci. 2018 Feb 24. pii: 2031-17. doi: 10.1523/JNEUROSCI.2031-17.2018. [Epub ahead of print]
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Abe K, Katsuno H, Toriyama M, Baba K, Mori T, Hakoshima T, Kanemura Y, Watanabe R, Inagaki N.(2018) Grip and slip of L1-CAM on adhesive substrates direct growth cone haptotaxis. Proc Natl Acad Sci U S A. 2018 Feb 26. pii: 201711667. doi: 10.1073/pnas.1711667115. [Epub ahead of print]
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Takpho N, Watanabe D, Takagi H.(2018) High-level production of valine by expression of the feedback inhibition-insensitive acetohydroxyacid synthase in Saccharomyces cerevisiae. Metab Eng. 2018 Mar 3;46:60-67. doi: 10.1016/j.ymben.2018.02.011. [Epub ahead of print]
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Inada N.(2018) Correction to: Plant actin depolymerizing factor: actin microfilament disassembly and more. J Plant Res. 2018 Feb 21. doi: 10.1007/s10265-018-1013-1. [Epub ahead of print]
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Takemoto K, Ebine K, Askani JC, Krüger F, Gonzalez ZA, Ito E, Goh T, Schumacher K, Nakano A, Ueda T.(2018) Distinct sets of tethering complexes, SNARE complexes, and Rab GTPases mediate membrane fusion at the vacuole in Arabidopsis. Proc Natl Acad Sci U S A. 2018 Mar 6;115(10):E2457-E2466. doi: 10.1073/pnas.1717839115. Epub 2018 Feb 20.
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Nakayama H, Sakamoto T, Okegawa Y, Kaminoyama K, Fujie M, Ichihashi Y, Kurata T, Motohashi K, Al-Shehbaz I, Sinha N, Kimura S.(2018) Comparative transcriptomics with self-organizing map reveals cryptic photosynthetic differences between two accessions of North American Lake cress. https://www.ncbi.nlm.nih.gov/pubmed/29459626
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Melnyk CW, Gabel A, Hardcastle TJ, Robinson S, Miyashima S, Grosse I, Meyerowitz EM.(2018) Transcriptome dynamics at Arabidopsis graft junctions reveal an intertissue recognition mechanism that activates vascular regeneration. Proc Natl Acad Sci U S A. 2018 Mar 6;115(10):E2447-E2456. doi: 10.1073/pnas.1718263115. Epub 2018 Feb 13.
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Chai M, Sanosaka T, Okuno H, Zhou Z, Koya I, Banno S, Andoh-Noda T, Tabata Y, Shimamura R, Hayashi T, Ebisawa M, Sasagawa Y, Nikaido I, Okano H, Kohyama J.(2018) Chromatin remodeler CHD7 regulates the stem cell identity of human neural progenitors. Genes Dev. 2018 Jan 15;32(2):165-180. doi: 10.1101/gad.301887.117. Epub 2018 Feb 9.
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Testa E, Nardozi D, Antinozzi C, Faieta M, Di Cecca S, Caggiano C, Fukuda T, Bonanno E, Zhenkun L, Maldonado A, Roig I, Di Giacomo M, Barchi M.(2018) H2AFX and MDC1 promote maintenance of genomic integrity in male germ cells. J Cell Sci. 2018 Feb 7. pii: jcs.214411. doi: 10.1242/jcs.214411. [Epub ahead of print]
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Ogita N, Okushima Y, Tokizawa M, Yamamoto YY, Tanaka M, Seki M, Makita Y, Matsui M, Yoshiyama KO, Sakamoto T, Kurata T, Hiruma K, Saijo Y, Takahashi N, Umeda M.(2018) Identifying the target genes of SUPPRESSOR OF GAMMA RESPONSE 1, a master transcription factor controlling DNA damage response in Arabidopsis. Plant J. 2018 Feb 11. doi: 10.1111/tpj.13866. [Epub ahead of print]
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Yeon JY, Yoo SJ, Takagi H, Kang HA. (2018) A Novel Mitochondrial Serine O-Acetyltransferase, OpSAT1, Plays a Critical Role in Sulfur Metabolism in the Thermotolerant Methylotrophic Yeast Ogataea parapolymorpha. Sci Rep. 2018 Feb 5;8(1):2377. doi: 10.1038/s41598-018-20630-8.
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Kaneko-Suzuki M, Kurihara-Ishikawa R, Okushita-Terakawa C, Kojima C, Nagano-Fujiwara M, Ohki I, Tsuji H, Shimamoto K, Taoka K.(2018) TFL1-Like Proteins in Rice Antagonize Rice FT-Like Protein in Inflorescence Development by Competition for Complex Formation with 14-3-3 and FD. Plant Cell Physiol. 2018 Mar 1;59(3):458-468. doi: 10.1093/pcp/pcy021.
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Tanabashi S, Shoda K, Saito C, Sakamoto T, Kurata T, Uemura T, Nakano A.(2018) A missense mutation in the NSF gene causes abnormal Golgi morphology in Arabidopsis thaliana. Cell Struct Funct. 2018 Feb 2. doi: 10.1247/csf.17026. [Epub ahead of print]
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Furukawa A, Nakayama S, Yoshikaie K, Tanaka Y, Tsukazaki T.(2018) Remote Coupled Drastic β-Barrel to β-Sheet Transition of the Protein Translocation Motor. Structure. 2018 Mar 6;26(3):485-489.e2. doi: 10.1016/j.str.2018.01.002. Epub 2018 Feb 1.
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2018年02月

Ohtani M, Kawabe H, Demura T.(2018) Evidence that Thiol-Based Redox State is Critical for Xylem Vessel Cell Differentiation. Plant Signal Behav. 2018 Feb 2:0. doi: 10.1080/15592324.2018.1428512. [Epub ahead of print]
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Larasati YA, Yoneda-Kato N, Nakamae I, Yokoyama T, Meiyanto E, Kato JY.(2018) Curcumin targets multiple enzymes involved in the ROS metabolic pathway to suppress tumor cell growth. Sci Rep. 2018 Feb 1;8(1):2039. doi: 10.1038/s41598-018-20179-6.
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Yamaoka Y, Choi BY, Kim H, Shin S, Kim Y, Jang S, Song WY, Cho CH, Yoon HS, Kohno K, Lee Y.(2018) Identification and functional study of the ER stress sensor IRE1 in Chlamydomonas reinhardtii. Plant J. 2018 Jan 31. doi: 10.1111/tpj.13844. [Epub ahead of print]
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Mashiko T, Takada H, Wu SH, Kanayama K, Feng J, Tashiro K, Asahi R, Sunaga A, Hoshi K, Kurisaki A, Takato T, Yoshimura K.(2018) Therapeutic effects of a recombinant human collagen peptide bioscaffold with human adipose-derived stem cells on impaired wound healing after radiotherapy.
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Nakahata Y, Yasukawa S, Khaidizar FD, Shimba S, Matsui T, Bessho Y.(2018) Bmal1-deficient mouse fibroblast cells do not provide premature cellular senescence in vitro. Chronobiol Int. 2018 Jan 26:1-9. doi: 10.1080/07420528.2018.1430038. [Epub ahead of print]
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Maki K, Han SW, Hirano Y, Yonemura S, Hakoshima T, Adachi T.(2018) Real-time TIRF observation of vinculin recruitment to stretched α-catenin by AFM. Sci Rep. 2018 Jan 25;8(1):1575. doi: 10.1038/s41598-018-20115-8.
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Inoue N, Ogura S, Kasai A, Nakazawa T, Ikeda K, Higashi S, Isotani A, Baba K, Mochizuki H, Fujimura H, Ago Y, Hayata-Takano A, Seiriki, Shintani Y, Shintani N, Hashimoto H.(2018) Knockdown of the mitochondria-localized protein p13 protects against experimental parkinsonism. EMBO Rep. 2018 Jan 25. pii: e44860. doi: 10.15252/embr.201744860. [Epub ahead of print]
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Hakoshima T.(2018) Structural basis of the specific interactions of GRAS family proteins. FEBS Lett. 2018 Jan 24. doi: 10.1002/1873-3468.12987. [Epub ahead of print]
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Mori T, Ito T, Liu S, Ando H, Sakamoto S, Yamaguchi Y, Tokunaga E, Shibata N, Handa H, Hakoshima T.(2018) Structural basis of thalidomide enantiomer binding to cereblon. Sci Rep. 2018 Jan 22;8(1):1294. doi: 10.1038/s41598-018-19202-7.
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Ueno D, Yamasaki S, Demura T, Kato K.(2018) Comprehensive analysis of mRNA internal cleavage sites in Arabidopsis thaliana. J Biosci Bioeng. 2018 Jan 18. pii: S1389-1723(17)31090-3. doi: 10.1016/j.jbiosc.2017.12.022. [Epub ahead of print]
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Itooka K, Takahashi K, Kimata Y, Izawa S.(2018) Cold atmospheric pressure plasma causes protein denaturation and endoplasmic reticulum stress in Saccharomyces cerevisiae. Appl Microbiol Biotechnol. 2018 Jan 22. doi: 10.1007/s00253-018-8758-2. [Epub ahead of print]
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Hasegawa S, Jojima T, Inui M.(2018) Efficient construction of xenogeneic genomic libraries by circumventing restriction-modification systems that restrict methylated DNA. J Microbiol Methods. 2018 Feb 1;146:13-15. doi: 10.1016/j.mimet.2018.01.005. [Epub ahead of print]
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Ohtani M.(2018) Plant snRNP Biogenesis: A Perspective from the Nucleolus and Cajal Bodies. Front Plant Sci. 2018 Jan 4;8:2184. doi: 10.3389/fpls.2017.02184. eCollection 2017.
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Vacca B, Sanchez-Heras E, Steed E, Busson SL, Balda MS, Ohnuma SI, Sasai N, Mayor R, Matter K.(2018) Control of neural crest induction by MarvelD3-mediated attenuation of JNK signalling. Sci Rep. 2018 Jan 19;8(1):1204. doi: 10.1038/s41598-018-19579-5.
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Kitade Y, Hashimoto R, Suda M, Hiraga K, Inui M.(2018) Production of 4-Hydroxybenzoic Acid by an Aerobic Growth-Arrested Bioprocess using Metabolically Engineered Corynebacterium glutamicum. Appl Environ Microbiol. 2018 Jan 5. pii: AEM.02587-17. doi: 10.1128/AEM.02587-17. [Epub ahead of print]
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2018年01月

Nakamae I, Kato JY, Yokoyama T, Ito H, Yoneda-Kato N.(2017) Myeloid leukemia factor 1 stabilizes tumor suppressor C/EBPα to prevent Trib1-driven acute myeloid leukemia. Blood Adv. 2017 Sep 1;1(20):1682-1693. doi: 10.1182/bloodadvances.2017007054. eCollection 2017 Sep 12.
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Tsuchiya T, Fujii M, Matsuda N, Kunida K, Uda S, Kubota H, Konishi K, Kuroda S.(2017) System identification of signaling dependent gene expression with different time-scale data. PLoS Comput Biol. 2017 Dec 27;13(12):e1005913. doi: 10.1371/journal.pcbi.1005913. eCollection 2017 Dec.
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Saijo Y, Loo EP, Yasuda S.(2017) Pattern recognition receptors and signaling in plant-microbe interactions. Plant J. 2017 Dec 20. doi: 10.1111/tpj.13808. [Epub ahead of print]
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Tamura H, Shiosaka S, Morikawa S.(2017) Trophic modulation of gamma oscillations: The key role of processing protease for Neuregulin-1 and BDNF precursors. Neurochem Int. 2017 Dec 9. pii: S0197-0186(17)30461-8. doi: 10.1016/j.neuint.2017.12.002. [Epub ahead of print]
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Nakajima K.(2017) Be my baby: patterning toward plant germ cells. Curr Opin Plant Biol. 2017 Dec 6;41:110-115. doi: 10.1016/j.pbi.2017.11.002. [Epub ahead of print]
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Uemura A, Yamaguchi N, Xu Y, Wee W, Ichihashi Y, Suzuki T, Shibata A, Shirasu K, Ito T.(2017) Regulation of floral meristem activity through the interaction of AGAMOUS, SUPERMAN, and CLAVATA3 in Arabidopsis. Plant Reprod. 2017 Dec 7. doi: 10.1007/s00497-017-0315-0. [Epub ahead of print]
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Kimura Y, Tasaka M, Torii KU, Uchida N.(2017) ERECTA-family genes coordinate stem cell functions between the epidermal and internal layers of the shoot apical meristem. Development. 2018 Jan 8;145(1). pii: dev156380. doi: 10.1242/dev.156380.
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Peng M, Shahzad R, Gul A, Subthain H, Shen S, Lei L, Zheng Z, Zhou J, Lu D, Wang S, Nishawy E, Liu X, Tohge T, Fernie AR, Luo J.(2017) Differentially evolved glucosyltransferases determine natural variation of rice flavone accumulation and UV-tolerance. Nat Commun. 2017 Dec 7;8(1):1975. doi: 10.1038/s41467-017-02168-x.
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Friesner J, Assmann SM, Bastow R, Bailey-Serres J, Beynon J, Brendel V, Buell CR, Bucksch A, Busch W, Demura T, Dinneny JR, Doherty CJ, Eveland AL, Falter-Braun P, Gehan MA, Gonzales M, Grotewold E, Gutierrez R, Kramer U, Krouk G, Ma S, Markelz RJC, Megraw M, Meyers BC, Murray JAH, Provart NJ, Rhee S, Smith R, Spalding EP, Taylor C, Teal TK, Torii KU, Town C, Vaughn M, Vierstra R, Ware D, Wilkins O, Williams C, Brady SM.(2017) The Next Generation of Training for Arabidopsis Researchers: Bioinformatics and Quantitative Biology. Plant Physiol. 2017 Dec;175(4):1499-1509. doi: 10.1104/pp.17.01490.
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