研究業績の紹介

研究業績の紹介

2018年05月

2018年04月

Tohge T, Borghi M, Fernie AR.(2018) The natural variance of the Arabidopsis floral secondary metabolites. Sci Data. 2018 Apr 3;5:180051. doi: 10.1038/sdata.2018.51.
( 2018/04/18 )

Miyazono KI, Moriwaki S, Ito T, Kurisaki A, Asashima M, Tanokura M.(2018) Hydrophobic patches on SMAD2 and SMAD3 determine selective binding to cofactors. Sci Signal. 2018 Mar 27;11(523). pii: eaao7227. doi: 10.1126/scisignal.aao7227.
( 2018/04/18 )

Nakayasu M, Shioya N, Shikata M, Thagun C, Abdelkareem A, Okabe Y, Ariizumi T, Arimura GI, Mizutani M, Ezura H, Hashimoto T, Shoji T.(2018) JRE4 is a master transcriptional regulator of defense-related steroidal glycoalkaloids in tomato. Plant J. 2018 Mar 23. doi: 10.1111/tpj.13911. [Epub ahead of print]
( 2018/04/18 )

Shimada T, Takagi J, Ichino T, Shirakawa M, Hara-Nishimura I.(2018) Plant Vacuoles. Annu Rev Plant Biol. 2018 Mar 21. doi: 10.1146/annurev-arplant-042817-040508. [Epub ahead of print]
( 2018/04/18 )

Maier L, Pruteanu M, Kuhn M, Zeller G, Telzerow A, Anderson EE, Brochado AR, Fernandez KC, Dose H, Mori H, Patil KR, Bork P, Typas A.(2018) Extensive impact of non-antibiotic drugs on human gut bacteria. Nature. 2018 Mar 29;555(7698):623-628. doi: 10.1038/nature25979. Epub 2018 Mar 19.
( 2018/04/18 )

Yamanishi A, Matsuba A, Kondo R, Akamatsu R, Tanaka S, Tokunaga M, Horie K, Kokubu C, Ishida Y, Takeda J.(2018) Collection of homozygous mutant mouse embryonic stem cells arising from autodiploidization during haploid gene trap mutagenesis. Nucleic Acids Res. 2018 Mar 15. doi: 10.1093/nar/gky183. [Epub ahead of print]
( 2018/04/18 )

Hirano Y, Amano Y, Yonemura S, Hakoshima T.(2018) The force-sensing device region of α-catenin is an intrinsically disordered segment in the absence of intramolecular stabilization of the autoinhibitory form. Genes Cells. 2018 Mar 15. doi: 10.1111/gtc.12578. [Epub ahead of print]
( 2018/04/18 )

Yamada T, Nishiyama M, Oba S, Jimbo HC, Ikeda K, Ishii S, Hong K, Sakumura Y.(2018) Computational Methods for Estimating Molecular System from Membrane Potential Recordings in Nerve Growth Cone. Sci Rep. 2018 Mar 14;8(1):4559. doi: 10.1038/s41598-018-22506-3.
( 2018/04/18 )

Murase M, Kawasaki T, Hakozaki R, Sueyoshi T, Putri DDP, Kitai Y, Sato S, Ikawa M, Kawai T.(2018) Intravesicular Acidification Regulates Lipopolysaccharide Inflammation and Tolerance through TLR4 Trafficking. J Immunol. 2018 Apr 15;200(8):2798-2808. doi: 10.4049/jimmunol.1701390. Epub 2018 Mar 14.
( 2018/04/18 )

Nakamura K, Hisanaga T, Fujimoto K, Nakajima K, Wada H.(2018) Plant-inspired pipettes. J R Soc Interface. 2018 Mar;15(140). pii: 20170868. doi: 10.1098/rsif.2017.0868.
( 2018/04/18 )

Nishimura T, Morone N, Suetsugu S.(2018) Membrane re-modelling by BAR domain superfamily proteins via molecular and non-molecular factors. Biochem Soc Trans. 2018 Mar 14. pii: BST20170322. doi: 10.1042/BST20170322. [Epub ahead of print]
( 2018/04/18 )

Maeda T, Tanaka Y, Inui M.(2018) Glutamine-rich toxic proteins GrtA, GrtB, and GrtC together with the antisense RNA AsgR constitute a toxin-antitoxin-like system in Corynebacterium glutamicum. Mol Microbiol. 2018 Mar 14. doi: 10.1111/mmi.13951. [Epub ahead of print]
( 2018/04/18 )

Durr J, Papareddy R, Nakajima K, Gutierrez-Marcos J.(2018) Highly efficient heritable targeted deletions of gene clusters and non-coding regulatory regions in Arabidopsis using CRISPR/Cas9. Sci Rep. 2018 Mar 13;8(1):4443. doi: 10.1038/s41598-018-22667-1.
( 2018/04/18 )

Sari DWK, Akiyama R, Naoki H, Ishijima H, Bessho Y, Matsui T.(2018) Time-lapse observation of stepwise regression of Erk activity in zebrafish presomitic mesoderm. Sci Rep. 2018 Mar 12;8(1):4335. doi: 10.1038/s41598-018-22619-9.
( 2018/04/18 )

Sasagawa Y, Danno H, Takada H, Ebisawa M, Tanaka K, Hayashi T, Kurisaki A, Nikaido I.(2018) Quartz-Seq2: a high-throughput single-cell RNA-sequencing method that effectively uses limited sequence reads. Genome Biol. 2018 Mar 9;19(1):29. doi: 10.1186/s13059-018-1407-3.
( 2018/04/18 )

Shinya T, Yasuda S, Hyodo K, Tani R, Hojo Y, Fujiwara Y, Hiruma K, Ishizaki T, Fujita Y, Saijo Y, Galis I.(2018) Integration of danger peptide signals with herbivore-associated molecular pattern signaling amplifies anti-herbivore defense responses in rice. Plant J. 2018 Mar 7. doi: 10.1111/tpj.13883. [Epub ahead of print]
( 2018/04/18 )

Tsuchiya Y, Saito M, Kadokura H, Miyazaki JI, Tashiro F, Imagawa Y, Iwawaki T, Kohno K.(2018) IRE1-XBP1 pathway regulates oxidative proinsulin folding in pancreatic β cells. J Cell Biol. 2018 Apr 2;217(4):1287-1301. doi: 10.1083/jcb.201707143. Epub 2018 Mar 5.
( 2018/04/18 )

2018年03月

Cui S, Wada S, Tobimatsu Y, Takeda Y, Saucet SB, Takano T, Umezawa T, Shirasu K, Yoshida S. (2018) Host lignin composition affects haustorium induction in the parasitic plants Phtheirospermum japonicum and Striga hermonthica. New Phytol. 2018 Mar 2. doi: 10.1111/nph.15033. [Epub ahead of print]
( 2018/03/14 )

Chen J, Van Gulden S, McGuire TL, Fleming AC, Oka C, Kessler JA, Peng CY.(2018) BMP-responsive Protease HtrA1 is Differentially Expressed in Astrocytes and Regulates Astrocytic Development and Injury Response. J Neurosci. 2018 Feb 24. pii: 2031-17. doi: 10.1523/JNEUROSCI.2031-17.2018. [Epub ahead of print]
( 2018/03/14 )

Abe K, Katsuno H, Toriyama M, Baba K, Mori T, Hakoshima T, Kanemura Y, Watanabe R, Inagaki N.(2018) Grip and slip of L1-CAM on adhesive substrates direct growth cone haptotaxis. Proc Natl Acad Sci U S A. 2018 Feb 26. pii: 201711667. doi: 10.1073/pnas.1711667115. [Epub ahead of print]
( 2018/03/14 )

Takpho N, Watanabe D, Takagi H.(2018) High-level production of valine by expression of the feedback inhibition-insensitive acetohydroxyacid synthase in Saccharomyces cerevisiae. Metab Eng. 2018 Mar 3;46:60-67. doi: 10.1016/j.ymben.2018.02.011. [Epub ahead of print]
( 2018/03/14 )

Inada N.(2018) Correction to: Plant actin depolymerizing factor: actin microfilament disassembly and more. J Plant Res. 2018 Feb 21. doi: 10.1007/s10265-018-1013-1. [Epub ahead of print]
( 2018/03/14 )

Takemoto K, Ebine K, Askani JC, Krüger F, Gonzalez ZA, Ito E, Goh T, Schumacher K, Nakano A, Ueda T.(2018) Distinct sets of tethering complexes, SNARE complexes, and Rab GTPases mediate membrane fusion at the vacuole in Arabidopsis. Proc Natl Acad Sci U S A. 2018 Mar 6;115(10):E2457-E2466. doi: 10.1073/pnas.1717839115. Epub 2018 Feb 20.
( 2018/03/14 )

Nakayama H, Sakamoto T, Okegawa Y, Kaminoyama K, Fujie M, Ichihashi Y, Kurata T, Motohashi K, Al-Shehbaz I, Sinha N, Kimura S.(2018) Comparative transcriptomics with self-organizing map reveals cryptic photosynthetic differences between two accessions of North American Lake cress. https://www.ncbi.nlm.nih.gov/pubmed/29459626
( 2018/03/14 )

Melnyk CW, Gabel A, Hardcastle TJ, Robinson S, Miyashima S, Grosse I, Meyerowitz EM.(2018) Transcriptome dynamics at Arabidopsis graft junctions reveal an intertissue recognition mechanism that activates vascular regeneration. Proc Natl Acad Sci U S A. 2018 Mar 6;115(10):E2447-E2456. doi: 10.1073/pnas.1718263115. Epub 2018 Feb 13.
( 2018/03/14 )

Chai M, Sanosaka T, Okuno H, Zhou Z, Koya I, Banno S, Andoh-Noda T, Tabata Y, Shimamura R, Hayashi T, Ebisawa M, Sasagawa Y, Nikaido I, Okano H, Kohyama J.(2018) Chromatin remodeler CHD7 regulates the stem cell identity of human neural progenitors. Genes Dev. 2018 Jan 15;32(2):165-180. doi: 10.1101/gad.301887.117. Epub 2018 Feb 9.
( 2018/03/14 )

Testa E, Nardozi D, Antinozzi C, Faieta M, Di Cecca S, Caggiano C, Fukuda T, Bonanno E, Zhenkun L, Maldonado A, Roig I, Di Giacomo M, Barchi M.(2018) H2AFX and MDC1 promote maintenance of genomic integrity in male germ cells. J Cell Sci. 2018 Feb 7. pii: jcs.214411. doi: 10.1242/jcs.214411. [Epub ahead of print]
( 2018/03/14 )

Ogita N, Okushima Y, Tokizawa M, Yamamoto YY, Tanaka M, Seki M, Makita Y, Matsui M, Yoshiyama KO, Sakamoto T, Kurata T, Hiruma K, Saijo Y, Takahashi N, Umeda M.(2018) Identifying the target genes of SUPPRESSOR OF GAMMA RESPONSE 1, a master transcription factor controlling DNA damage response in Arabidopsis. Plant J. 2018 Feb 11. doi: 10.1111/tpj.13866. [Epub ahead of print]
( 2018/03/14 )

Yeon JY, Yoo SJ, Takagi H, Kang HA. (2018) A Novel Mitochondrial Serine O-Acetyltransferase, OpSAT1, Plays a Critical Role in Sulfur Metabolism in the Thermotolerant Methylotrophic Yeast Ogataea parapolymorpha. Sci Rep. 2018 Feb 5;8(1):2377. doi: 10.1038/s41598-018-20630-8.
( 2018/03/14 )

Kaneko-Suzuki M, Kurihara-Ishikawa R, Okushita-Terakawa C, Kojima C, Nagano-Fujiwara M, Ohki I, Tsuji H, Shimamoto K, Taoka K.(2018) TFL1-Like Proteins in Rice Antagonize Rice FT-Like Protein in Inflorescence Development by Competition for Complex Formation with 14-3-3 and FD. Plant Cell Physiol. 2018 Mar 1;59(3):458-468. doi: 10.1093/pcp/pcy021.
( 2018/03/14 )

Tanabashi S, Shoda K, Saito C, Sakamoto T, Kurata T, Uemura T, Nakano A.(2018) A missense mutation in the NSF gene causes abnormal Golgi morphology in Arabidopsis thaliana. Cell Struct Funct. 2018 Feb 2. doi: 10.1247/csf.17026. [Epub ahead of print]
( 2018/03/14 )

Furukawa A, Nakayama S, Yoshikaie K, Tanaka Y, Tsukazaki T.(2018) Remote Coupled Drastic β-Barrel to β-Sheet Transition of the Protein Translocation Motor. Structure. 2018 Mar 6;26(3):485-489.e2. doi: 10.1016/j.str.2018.01.002. Epub 2018 Feb 1.
( 2018/03/14 )

2018年02月

Ohtani M, Kawabe H, Demura T.(2018) Evidence that Thiol-Based Redox State is Critical for Xylem Vessel Cell Differentiation. Plant Signal Behav. 2018 Feb 2:0. doi: 10.1080/15592324.2018.1428512. [Epub ahead of print]
( 2018/02/08 )

Larasati YA, Yoneda-Kato N, Nakamae I, Yokoyama T, Meiyanto E, Kato JY.(2018) Curcumin targets multiple enzymes involved in the ROS metabolic pathway to suppress tumor cell growth. Sci Rep. 2018 Feb 1;8(1):2039. doi: 10.1038/s41598-018-20179-6.
( 2018/02/08 )

Yamaoka Y, Choi BY, Kim H, Shin S, Kim Y, Jang S, Song WY, Cho CH, Yoon HS, Kohno K, Lee Y.(2018) Identification and functional study of the ER stress sensor IRE1 in Chlamydomonas reinhardtii. Plant J. 2018 Jan 31. doi: 10.1111/tpj.13844. [Epub ahead of print]
( 2018/02/08 )

Mashiko T, Takada H, Wu SH, Kanayama K, Feng J, Tashiro K, Asahi R, Sunaga A, Hoshi K, Kurisaki A, Takato T, Yoshimura K.(2018) Therapeutic effects of a recombinant human collagen peptide bioscaffold with human adipose-derived stem cells on impaired wound healing after radiotherapy.
( 2018/02/08 )

Nakahata Y, Yasukawa S, Khaidizar FD, Shimba S, Matsui T, Bessho Y.(2018) Bmal1-deficient mouse fibroblast cells do not provide premature cellular senescence in vitro. Chronobiol Int. 2018 Jan 26:1-9. doi: 10.1080/07420528.2018.1430038. [Epub ahead of print]
( 2018/02/08 )

Maki K, Han SW, Hirano Y, Yonemura S, Hakoshima T, Adachi T.(2018) Real-time TIRF observation of vinculin recruitment to stretched α-catenin by AFM. Sci Rep. 2018 Jan 25;8(1):1575. doi: 10.1038/s41598-018-20115-8.
( 2018/02/08 )

Inoue N, Ogura S, Kasai A, Nakazawa T, Ikeda K, Higashi S, Isotani A, Baba K, Mochizuki H, Fujimura H, Ago Y, Hayata-Takano A, Seiriki, Shintani Y, Shintani N, Hashimoto H.(2018) Knockdown of the mitochondria-localized protein p13 protects against experimental parkinsonism. EMBO Rep. 2018 Jan 25. pii: e44860. doi: 10.15252/embr.201744860. [Epub ahead of print]
( 2018/02/08 )

Hakoshima T.(2018) Structural basis of the specific interactions of GRAS family proteins. FEBS Lett. 2018 Jan 24. doi: 10.1002/1873-3468.12987. [Epub ahead of print]
( 2018/02/08 )

Mori T, Ito T, Liu S, Ando H, Sakamoto S, Yamaguchi Y, Tokunaga E, Shibata N, Handa H, Hakoshima T.(2018) Structural basis of thalidomide enantiomer binding to cereblon. Sci Rep. 2018 Jan 22;8(1):1294. doi: 10.1038/s41598-018-19202-7.
( 2018/02/08 )

Ueno D, Yamasaki S, Demura T, Kato K.(2018) Comprehensive analysis of mRNA internal cleavage sites in Arabidopsis thaliana. J Biosci Bioeng. 2018 Jan 18. pii: S1389-1723(17)31090-3. doi: 10.1016/j.jbiosc.2017.12.022. [Epub ahead of print]
( 2018/02/08 )

Itooka K, Takahashi K, Kimata Y, Izawa S.(2018) Cold atmospheric pressure plasma causes protein denaturation and endoplasmic reticulum stress in Saccharomyces cerevisiae. Appl Microbiol Biotechnol. 2018 Jan 22. doi: 10.1007/s00253-018-8758-2. [Epub ahead of print]
( 2018/02/08 )

Hasegawa S, Jojima T, Inui M.(2018) Efficient construction of xenogeneic genomic libraries by circumventing restriction-modification systems that restrict methylated DNA. J Microbiol Methods. 2018 Feb 1;146:13-15. doi: 10.1016/j.mimet.2018.01.005. [Epub ahead of print]
( 2018/02/08 )

Ohtani M.(2018) Plant snRNP Biogenesis: A Perspective from the Nucleolus and Cajal Bodies. Front Plant Sci. 2018 Jan 4;8:2184. doi: 10.3389/fpls.2017.02184. eCollection 2017.
( 2018/02/08 )

Vacca B, Sanchez-Heras E, Steed E, Busson SL, Balda MS, Ohnuma SI, Sasai N, Mayor R, Matter K.(2018) Control of neural crest induction by MarvelD3-mediated attenuation of JNK signalling. Sci Rep. 2018 Jan 19;8(1):1204. doi: 10.1038/s41598-018-19579-5.
( 2018/02/08 )

Kitade Y, Hashimoto R, Suda M, Hiraga K, Inui M.(2018) Production of 4-Hydroxybenzoic Acid by an Aerobic Growth-Arrested Bioprocess using Metabolically Engineered Corynebacterium glutamicum. Appl Environ Microbiol. 2018 Jan 5. pii: AEM.02587-17. doi: 10.1128/AEM.02587-17. [Epub ahead of print]
( 2018/02/08 )

Neergheen-Bhujun V, Awan AT, Baran Y, Bunnefeld N, Chan K, Dela Cruz TE, Egamberdieva D, Elsässer S, Johnson MV, Komai S, Konevega AL, Malone JH, Mason P, Nguon R, Piper R, Shrestha UB, Pešić M, Kagansky A.(2018) Biodiversity, drug discovery, and the future of global health: Introducing the biodiversity to biomedicine consortium, a call to action. J Glob Health. 2017 Dec;7(2):020304. doi: 10.7189/jogh.07.020304.
( 2018/02/08 )

2018年01月

Nakamae I, Kato JY, Yokoyama T, Ito H, Yoneda-Kato N.(2017) Myeloid leukemia factor 1 stabilizes tumor suppressor C/EBPα to prevent Trib1-driven acute myeloid leukemia. Blood Adv. 2017 Sep 1;1(20):1682-1693. doi: 10.1182/bloodadvances.2017007054. eCollection 2017 Sep 12.
( 2018/01/12 )

Tsuchiya T, Fujii M, Matsuda N, Kunida K, Uda S, Kubota H, Konishi K, Kuroda S.(2017) System identification of signaling dependent gene expression with different time-scale data. PLoS Comput Biol. 2017 Dec 27;13(12):e1005913. doi: 10.1371/journal.pcbi.1005913. eCollection 2017 Dec.
( 2018/01/12 )

Saijo Y, Loo EP, Yasuda S.(2017) Pattern recognition receptors and signaling in plant-microbe interactions. Plant J. 2017 Dec 20. doi: 10.1111/tpj.13808. [Epub ahead of print]
( 2018/01/12 )

Tamura H, Shiosaka S, Morikawa S.(2017) Trophic modulation of gamma oscillations: The key role of processing protease for Neuregulin-1 and BDNF precursors. Neurochem Int. 2017 Dec 9. pii: S0197-0186(17)30461-8. doi: 10.1016/j.neuint.2017.12.002. [Epub ahead of print]
( 2018/01/12 )

Nakajima K.(2017) Be my baby: patterning toward plant germ cells. Curr Opin Plant Biol. 2017 Dec 6;41:110-115. doi: 10.1016/j.pbi.2017.11.002. [Epub ahead of print]
( 2018/01/12 )

Uemura A, Yamaguchi N, Xu Y, Wee W, Ichihashi Y, Suzuki T, Shibata A, Shirasu K, Ito T.(2017) Regulation of floral meristem activity through the interaction of AGAMOUS, SUPERMAN, and CLAVATA3 in Arabidopsis. Plant Reprod. 2017 Dec 7. doi: 10.1007/s00497-017-0315-0. [Epub ahead of print]
( 2018/01/12 )

Kimura Y, Tasaka M, Torii KU, Uchida N.(2017) ERECTA-family genes coordinate stem cell functions between the epidermal and internal layers of the shoot apical meristem. Development. 2018 Jan 8;145(1). pii: dev156380. doi: 10.1242/dev.156380.
( 2018/01/12 )

Peng M, Shahzad R, Gul A, Subthain H, Shen S, Lei L, Zheng Z, Zhou J, Lu D, Wang S, Nishawy E, Liu X, Tohge T, Fernie AR, Luo J.(2017) Differentially evolved glucosyltransferases determine natural variation of rice flavone accumulation and UV-tolerance. Nat Commun. 2017 Dec 7;8(1):1975. doi: 10.1038/s41467-017-02168-x.
( 2018/01/12 )

Friesner J, Assmann SM, Bastow R, Bailey-Serres J, Beynon J, Brendel V, Buell CR, Bucksch A, Busch W, Demura T, Dinneny JR, Doherty CJ, Eveland AL, Falter-Braun P, Gehan MA, Gonzales M, Grotewold E, Gutierrez R, Kramer U, Krouk G, Ma S, Markelz RJC, Megraw M, Meyers BC, Murray JAH, Provart NJ, Rhee S, Smith R, Spalding EP, Taylor C, Teal TK, Torii KU, Town C, Vaughn M, Vierstra R, Ware D, Wilkins O, Williams C, Brady SM.(2017) The Next Generation of Training for Arabidopsis Researchers: Bioinformatics and Quantitative Biology. Plant Physiol. 2017 Dec;175(4):1499-1509. doi: 10.1104/pp.17.01490.
( 2018/01/12 )